Stem-loop osa-MIR2118c

Accession

MI0011253

Description

Oryza sativa osa-MIR2118c precursor miRNA

Literature search

29 open access papers mention osa-MIR2118c
(159 sentences)

Sequence

11183 reads, 85.0 reads per million, 100 experiments

ugGGAAUAGGAACAUGGAGGAAAGccuaaagcuaaauuuucugcuccaguauuggagcuagagauuugcucaguuUUCCCGAUGCCUCCUAUUCCUA
(((((((((((.(((.(.(((((((....(((.(((((((..((((((....))))))..))))))))))..)))))))).)))..)))))))))))

Structure

           -A   G A       cuaa   u       cu      g 
ugGGAAUAGGA  CAU G GGAAAGc    agc aaauuuu  gcucca u
|||||||||||  ||| | |||||||    ||| |||||||  ||||||  
AUCCUUAUCCU  GUA C CCUUuug    ucg uuuagag  cgaggu a
           CC   G -       --ac   -       au      u 

Annotation confidence High

Genome context

4: 21647968-21648064 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from osa-MIR2118c

Mature osa-miR2118c-5p

• Accession: MIMAT0056115
• Description: Oryza sativa osa-miR2118c-5p mature miRNA
• Sequence: 3 - GGAAUAGGAACAUGGAGGAAAG - 24
• Evidence: experimental ; unknown

Mature osa-miR2118c-3p

• Accession: MIMAT0011742
• Description: Oryza sativa osa-miR2118c-3p mature miRNA
• Sequence: 76 - UUCCCGAUGCCUCCUAUUCCUA - 97
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440