Stem-loop osa-MIR2118d

Accession

MI0011254

Description

Oryza sativa osa-MIR2118d precursor miRNA

Literature search

29 open access papers mention osa-MIR2118d
(160 sentences)

Sequence

9717 reads, 128.0 reads per million, 90 experiments

guggaucaggaagaggaagaaaagagggucugagagcggugGGCAUGGGAACAUGGAGGAAAgcccaaacucuucuucgccucuagaacuaggggcugagauuugguuuccuuguuUUCCUGAUGCCUCCCAUGCCUAUuguucucagaugcuccuuccucuuccuuuugguucgc
(((((((((((((((((((....(((.(((((((((((((((((((((((.(((..((((((((..(((((..((((.(((((((....))))))).))))...)))))....)))))))).)))..))))))))))))))))))))))).))))))))))))))...))))))))

Structure

        ---           aaaa   g                       -A   GG        --cc     -cu    c       g 
guggauca   ggaagaggaag    gag gucugagagcggugGGCAUGGGA  CAU  AGGAAAgc    aaacu   ucuu gccucua a
||||||||   |||||||||||    ||| |||||||||||||||||||||||  |||  ||||||||    |||||   |||| |||||||  
cgcuuggu   ccuucuccuuc    cuc uagacucuuguUAUCCGUACCCU  GUA  UCCUUuug    uuugg   agag cggggau a
        uuu           ----   g                       CC   -G        uucc     uuu    u       c 

Annotation confidence Medium

Genome context

4: 21647689-21647864 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from osa-MIR2118d

Mature osa-miR2118d-5p

• Accession: MIMAT0056116
• Description: Oryza sativa osa-miR2118d-5p mature miRNA
• Sequence: 42 - GGCAUGGGAACAUGGAGGAAA - 62
• Evidence: experimental ; unknown

Mature osa-miR2118d-3p

• Accession: MIMAT0011743
• Description: Oryza sativa osa-miR2118d-3p mature miRNA
• Sequence: 117 - UUCCUGAUGCCUCCCAUGCCUAU - 139
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440