Stem-loop osa-MIR2118e

Accession

MI0011255

Description

Oryza sativa osa-MIR2118e precursor miRNA

Literature search

29 open access papers mention osa-MIR2118e
(159 sentences)

Sequence

14399 reads, 129.0 reads per million, 123 experiments

agugagucaggaagaggaagaaaagagagucuaagagcagcaGGCAUGGGAACAUGGAGGAAAaaacauauauaguuuucuuccccucuaaaguuagagguugaaauuugcuguguguuuUUCCCAAUGCCUCCCAUGCCUAcaguucuuaggcacuccuuccacuuccuguuggcu
(((.((.(((((((.(((((....(((.((((((((((.(.((((((((((.(((.(.(((((((.(((((((((.((((....((((((....))))))..)))).))).)))))))))))))).)))..)))))))))).).)))))))))).)))))))).))))))))).)))

Structure

   g  u       a     aaaa   a          a c          -A   G A       a      -   u    uucc      a 
agu ag caggaag ggaag    gag gucuaagagc g aGGCAUGGGA  CAU G GGAAAaa cauaua uag uuuc    ccucua a
||| || ||||||| |||||    ||| |||||||||| | ||||||||||  ||| | ||||||| |||||| ||| ||||    ||||||  
ucg uu guccuuc ccuuc    cuc cggauucuug c UCCGUACCCU  GUA C CCUUuuu gugugu guu aaag    ggagau g
   g  -       a     ----   a          a A          CC   A -       -      c   u    --uu      u 

Annotation confidence High

Genome context

4: 21647428-21647604 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from osa-MIR2118e

Mature osa-miR2118e-5p

• Accession: MIMAT0056117
• Description: Oryza sativa osa-miR2118e-5p mature miRNA
• Sequence: 43 - GGCAUGGGAACAUGGAGGAAA - 63
• Evidence: experimental ; unknown

Mature osa-miR2118e-3p

• Accession: MIMAT0011744
• Description: Oryza sativa osa-miR2118e-3p mature miRNA
• Sequence: 121 - UUCCCAAUGCCUCCCAUGCCUA - 142
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440