Stem-loop osa-MIR2118g

Accession

MI0011257

Description

Oryza sativa osa-MIR2118g precursor miRNA

Literature search

28 open access papers mention osa-MIR2118g
(157 sentences)

Sequence

3997 reads, 35.0 reads per million, 85 experiments

gugaacuugggaagaggaagacagagggucuaagagcuguaGGAAUGGGAACAUGGAGGAAAGugcaagcuccauguuuguggagacuuggcuugcaacuUUCCUAAUGCCUCCCAUUCCUAUuguucuuaggugcuccuuccucuuccuuuggucucac
(((((((.((((((((((((...(((.((((((((((.((((((((((((.(((..(((((((((((((((((((....)))))......)))))).)))))))).)))..)))))))))))).)))))))))).)))))))))))))))..))).))))

Structure

    -   -u            aca   g          u            -A   GG        -      ------     g 
guga acu  gggaagaggaag   gag gucuaagagc guaGGAAUGGGA  CAU  AGGAAAGu gcaagc      uccau u
|||| |||  ||||||||||||   ||| |||||||||| ||||||||||||  |||  |||||||| ||||||      |||||  
cacu ugg  uccuucuccuuc   cuc uggauucuug UAUCCUUACCCU  GUA  UCCUUuca cguucg      aggug u
    c   uu            ---   g          u            CC   -A        a      guucag     u 

Annotation confidence High

Genome context

4: 21650301-21650460 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from osa-MIR2118g

Mature osa-miR2118g-5p

• Accession: MIMAT0056119
• Description: Oryza sativa osa-miR2118g-5p mature miRNA
• Sequence: 42 - GGAAUGGGAACAUGGAGGAAAG - 63
• Evidence: experimental ; unknown

Mature osa-miR2118g-3p

• Accession: MIMAT0011746
• Description: Oryza sativa osa-miR2118g-3p mature miRNA
• Sequence: 101 - UUCCUAAUGCCUCCCAUUCCUAU - 123
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440