Stem-loop osa-MIR2118h

Accession

MI0011258

Description

Oryza sativa osa-MIR2118h precursor miRNA

Literature search

31 open access papers mention osa-MIR2118h
(160 sentences)

Sequence

2879 reads, 32.0 reads per million, 52 experiments

ggaagaggaagaaagagaggaucucagaaauguaGGAAUGAGAACAUGAAGGAAAGUcuaagagcuaaugucuccucuacauuggaggucgagacuuaguuucauguuUUCCUGAUGCCUCUCAUUCCUAUgguucuagggugcuccuuccucuucc
(((((((((((.....(((.((((.((((.(((((((((((((.(((..(((((((.(...(((((((.((((((((((...))))))...)))))))))))...)))))))).)))..))))))))))))).)))).)))).))))))))))))))

Structure

           aaaga   g    c    a             -A   GA       U uaa       u    ---      c 
ggaagaggaag     gag aucu agaa uguaGGAAUGAGA  CAU  AGGAAAG c   gagcuaa gucu   ccucua  
|||||||||||     ||| |||| |||| |||||||||||||  |||  ||||||| |   ||||||| ||||   |||||| a
ccuucuccuuc     cuc uggg ucuu gUAUCCUUACUCU  GUA  UCCUUuu g   uuugauu caga   ggaggu  
           -----   g    a    g             CC   -G       - uac       -    gcu      u 

Annotation confidence High

Genome context

4: 21652652-21652808 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from osa-MIR2118h

Mature osa-miR2118h-5p

• Accession: MIMAT0056120
• Description: Oryza sativa osa-miR2118h-5p mature miRNA
• Sequence: 35 - GGAAUGAGAACAUGAAGGAAAGU - 57
• Evidence: experimental ; unknown

Mature osa-miR2118h-3p

• Accession: MIMAT0011747
• Description: Oryza sativa osa-miR2118h-3p mature miRNA
• Sequence: 109 - UUCCUGAUGCCUCUCAUUCCUAU - 131
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440