Stem-loop osa-MIR2118i

Accession

MI0011259

Description

Oryza sativa osa-MIR2118i precursor miRNA

Literature search

28 open access papers mention osa-MIR2118i
(158 sentences)

Sequence

1403 reads, 27.0 reads per million, 48 experiments

gcaaguaaggaagaggaagaaauugagugucuaagggCAAUCGGAAUGGGAACAUugaggaaagccuacagcgucuuucucguccacuagaagugggggguaaagauaauguuuuuguguuUUCCUAGUGCCUCCCAUUCCUAUuguccuuagauacuccuuccucuuccuuucagcuugc
(((((((((((((((((((.....(((((((((((((((((.(((((((((.((((.((((((((..(((..((((((.((.((((((...)))))).)).))))))..)))......))))))))))))..))))))))).))))))))))))))))))))))))))))))...))))))

Structure

      ---             aaauu                 C         -A    g        ----cu   gc      c  g      a 
gcaagu   aaggaagaggaag     gagugucuaagggCAAU GGAAUGGGA  CAUu aggaaagc      aca  gucuuu uc uccacu  
||||||   |||||||||||||     ||||||||||||||||| |||||||||  |||| ||||||||      |||  |||||| || |||||| g
cguucg   uuccuucuccuuc     cucauagauuccuguUA CCUUACCCU  GUGA UCCUUuug      ugu  uagaaa gg ggguga  
      acu             -----                 U         CC    -        uguuuu   aa      u  g      a 

Annotation confidence Medium

Genome context

4: 21652388-21652568 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from osa-MIR2118i

Mature osa-miR2118i-5p

• Accession: MIMAT0056121
• Description: Oryza sativa osa-miR2118i-5p mature miRNA
• Sequence: 38 - CAAUCGGAAUGGGAACAU - 55
• Evidence: experimental ; unknown

Mature osa-miR2118i-3p

• Accession: MIMAT0011748
• Description: Oryza sativa osa-miR2118i-3p mature miRNA
• Sequence: 122 - UUCCUAGUGCCUCCCAUUCCUAU - 144
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440