Stem-loop osa-MIR2118k

Accession

MI0011261

Description

Oryza sativa osa-MIR2118k precursor miRNA

Literature search

28 open access papers mention osa-MIR2118k
(157 sentences)

Sequence

3500 reads, 39.0 reads per million, 58 experiments

gcaagccaggaagaggaagaaagagaguaucucagaauuguGGGAAUGAGACCAUGAAGGAAAgccuaagcucuauuguccccucuaguauuggagguggaaacuuaguuucauguuUUCCUGAUGCCUCUCAUUCCUAUuguucuuaggugcuccuuccucuuccuuuuggcuugc
(((((((((((((((((((.....((((((((.(((((.((((((((((((.(((..((((((((..(((((......(((((((((....)))))).))).....)))))...)))))))).)))..)))))))))))).))))).)))))))))))))))))))...))))))))

Structure

        ---           aaaga        c     u            -C   GA        -cu     cuauug   -      g 
gcaagcca   ggaagaggaag     gaguaucu agaau guGGGAAUGAGA  CAU  AGGAAAgc   aagcu      ucc ccucua u
||||||||   |||||||||||     |||||||| ||||| ||||||||||||  |||  ||||||||   |||||      ||| ||||||  
cguucggu   ccuucuccuuc     cucgugga ucuug UAUCCUUACUCU  GUA  UCCUUuug   uuuga      agg ggaggu a
        uuu           -----        u     u            CC   -G        uac     -uucaa   u      u 

Annotation confidence Medium

Genome context

4: 21656944-21657120 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from osa-MIR2118k

Mature osa-miR2118k-5p

• Accession: MIMAT0056123
• Description: Oryza sativa osa-miR2118k-5p mature miRNA
• Sequence: 42 - GGGAAUGAGACCAUGAAGGAAA - 63
• Evidence: experimental ; unknown

Mature osa-miR2118k-3p

• Accession: MIMAT0011750
• Description: Oryza sativa osa-miR2118k-3p mature miRNA
• Sequence: 118 - UUCCUGAUGCCUCUCAUUCCUAU - 140
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440