Stem-loop osa-MIR2118l

Accession

MI0011262

Description

Oryza sativa osa-MIR2118l precursor miRNA

Literature search

28 open access papers mention osa-MIR2118l
(159 sentences)

Sequence

1369 reads, 24.0 reads per million, 54 experiments

agcgaguuaggaagaggaagaaauugaguguCUAAGAACAGUGGGAAUGGAAacauuaaggaaagccuacaguauuuucuucuccacuagaauuagggguggagauaauucuuuuguguuUUCCUAAUGCUUCCCAUUCCUAUuguuguuagauacuccuuccucuuccuuuuggcu
(((.((..((((((((((((.....((((((((((.((((((((((((((((.(((((.(((((((..((((........((((((((.........))))))))........)))))))))))))))).)).)))))))))))))).)))))))))))))))))))))).)).)))

Structure

   g  uu            aaauu          G              -  a     a       cu    uauuuucu        aga 
agc ag  aggaagaggaag     gaguguCUAA AACAGUGGGAAUGG AA cauua ggaaagc  acag        ucuccacu   a
||| ||  ||||||||||||     |||||||||| |||||||||||||| || ||||| |||||||  ||||        ||||||||   u
ucg uu  uccuucuccuuc     cucauagauu uuguUAUCCUUACC UU GUAAU CCUUuug  uguu        agaggugg   u
   g  -u            -----          g              C  C     -       --    uucuuaau        gga 

Annotation confidence Low

Genome context

4: 21656708-21656884 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from osa-MIR2118l

Mature osa-miR2118l-5p

• Accession: MIMAT0056124
• Description: Oryza sativa osa-miR2118l-5p mature miRNA
• Sequence: 32 - CUAAGAACAGUGGGAAUGGAA - 52
• Evidence: experimental ; unknown

Mature osa-miR2118l-3p

• Accession: MIMAT0011751
• Description: Oryza sativa osa-miR2118l-3p mature miRNA
• Sequence: 121 - UUCCUAAUGCUUCCCAUUCCUAU - 143
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440