Stem-loop osa-MIR2118m

Accession

MI0011263

Description

Oryza sativa osa-MIR2118m precursor miRNA

Literature search

28 open access papers mention osa-MIR2118m
(158 sentences)

Sequence

9168 reads, 78.0 reads per million, 89 experiments

ggugagccaggaagaggauagagacucuaagagcaguaGGAAUGGGAACAUGAAGGAAAGccaaaccaagcucuaacuccuggaguuggagauuugguauaacgauuUUCCUGAUGCCUCCCAUUCCUAcaguucuuagguccuuguuccucuuacuuucggcuaacacc
((((((((((((((((((..(((((.((((((((.((((((((((((.(((..((((((((...(((((((((((((((...))))))))).)))))).....).))))))).)))..)))))))))))).)))))))))).)))..))))))).)))..))))..))))

Structure

    --    --   -       ua   -  u        a            -A   GA       - --caa      -         c 
ggug  agcc  agg aagagga  gag ac cuaagagc guaGGAAUGGGA  CAU  AGGAAAG c     accaag cucuaacuc  
||||  ||||  ||| |||||||  ||| || |||||||| ||||||||||||  |||  ||||||| |     |||||| ||||||||| u
ccac  ucgg  uuc uucuccu  uuc ug gauucuug cAUCCUUACCCU  GUA  UCCUUuu g     ugguuu gagguugag  
    aa    cu   a       ug   c  -        a            CC   -G       a caaua      a         g 

Annotation confidence Medium

Genome context

4: 21658851-21659020 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from osa-MIR2118m

Mature osa-miR2118m-5p

• Accession: MIMAT0056125
• Description: Oryza sativa osa-miR2118m-5p mature miRNA
• Sequence: 39 - GGAAUGGGAACAUGAAGGAAAG - 60
• Evidence: experimental ; unknown

Mature osa-miR2118m-3p

• Accession: MIMAT0011752
• Description: Oryza sativa osa-miR2118m-3p mature miRNA
• Sequence: 108 - UUCCUGAUGCCUCCCAUUCCUA - 129
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440