Stem-loop osa-MIR2118n

Accession

MI0011264

Description

Oryza sativa osa-MIR2118n precursor miRNA

Literature search

28 open access papers mention osa-MIR2118n
(160 sentences)

Sequence

23572 reads, 129.0 reads per million, 127 experiments

gugagccaggaagaggaagaaagagagagccuaagagcagugGGAAUGGGAACAUGGAGGAAAGccuaaaaaccaaauuucuuccuccagcaauggagguggaaauuugguuugguuuuUUCCCGAUGCCUCCCAUUCCUAUcguucuuaagcacuucuuccucuuccuuucagcucgc
((((((.(((((((((((((.....((.((.(((((((.((((((((((((.(((((.((((((((...(((((((((((((.((((((....)))))).))))))))))))))))))))).)).)))..)))))))))))).))))))).)).)))))))))))))))....))))))

Structure

      ---c             aagag  a  c       a            -A   -  A        uaa             u      g 
gugagc    aggaagaggaaga     ag gc uaagagc gugGGAAUGGGA  CAU GG GGAAAGcc   aaaccaaauuucu ccucca c
||||||    |||||||||||||     || || ||||||| ||||||||||||  ||| || ||||||||   ||||||||||||| ||||||  
cgcucg    uccuucuccuucu     uc cg auucuug UAUCCUUACCCU  GUA CC UUuuuugg   uuugguuuaaagg ggaggu a
      acuu             -----  a  a       c            CC   G  C        ---             u      a 

Annotation confidence High

Genome context

4: 21661494-21661672 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from osa-MIR2118n

Mature osa-miR2118n-5p

• Accession: MIMAT0056126
• Description: Oryza sativa osa-miR2118n-5p mature miRNA
• Sequence: 43 - GGAAUGGGAACAUGGAGGAAAG - 64
• Evidence: experimental ; unknown

Mature osa-miR2118n-3p

• Accession: MIMAT0011753
• Description: Oryza sativa osa-miR2118n-3p mature miRNA
• Sequence: 120 - UUCCCGAUGCCUCCCAUUCCUAU - 142
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440