Stem-loop osa-MIR2118p

Accession

MI0011266

Description

Oryza sativa osa-MIR2118p precursor miRNA

Literature search

28 open access papers mention osa-MIR2118p
(158 sentences)

Sequence

4796 reads, 63.0 reads per million, 75 experiments

gugggucaggaagaggaagaaaagaguaccuaagaguagugGGCAUGGGAACAUGGAGGAAAGUucaaacucuucuuccccucuaaauuaggggggucgacuuguuuugauguuUUCCCGAUGCCUCCCAUGCCUAUuguccuuaggugcuccuuccucuucccuuuggcacac
(((.(((((((((((((((....(((((((((((.(((((((((((((((.(((.(.((((((.((((((...((..((((((((...))))))))..))...).)))))..))))))).)))..)))))))))))))).)))))))))))))))))))))))...)))).)))

Structure

   g    ---           aaaa           a -              -A   G A      -U     - ucu  uu        a 
gug guca   ggaagaggaag    gaguaccuaag g uagugGGCAUGGGA  CAU G GGAAAG  ucaaa c   uc  ccccucua  
||| ||||   |||||||||||    ||||||||||| | ||||||||||||||  ||| | ||||||  ||||| |   ||  |||||||| a
cac cggu   ccuucuccuuc    cucguggauuc c guUAUCCGUACCCU  GUA C CCUUuu  aguuu g   ag  ggggggau  
   a    uuc           ----           - u              CC   G -      gu     u uuc  cu        u 

Annotation confidence High

Genome context

11: 7807433-7807606 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR2118p

Mature osa-miR2118p-5p

• Accession: MIMAT0056128
• Description: Oryza sativa osa-miR2118p-5p mature miRNA
• Sequence: 42 - GGCAUGGGAACAUGGAGGAAAGU - 64
• Evidence: experimental ; unknown

Mature osa-miR2118p-3p

• Accession: MIMAT0011755
• Description: Oryza sativa osa-miR2118p-3p mature miRNA
• Sequence: 115 - UUCCCGAUGCCUCCCAUGCCUAU - 137
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440