Stem-loop osa-MIR2118q

Accession

MI0011267

Description

Oryza sativa osa-MIR2118q precursor miRNA

Literature search

29 open access papers mention osa-MIR2118q
(164 sentences)

Sequence

11512 reads, 86.0 reads per million, 103 experiments

gugagcagggaagaggaagaaagagagccucuaagagcgaugGGAAUAGGAACAUGGAGGAAAGccugaagcuaaauuuucuacuccaguaucggaguuagaaauuugcucugcguuUUCCCGAUGCCUCCUAUUCCUAccgaucuuagguacuccuuccucuuccuuuaagcucau
(((((((((((((((((((...(((.((((..((((.((.(((((((((((.(((.(.((((((((.((.((.(((((((..(((((......)))))..))))))))))).).)))))))).)))..))))))))))).)).)))))))).))))))))))))))))...))))))

Structure

      ---             aaa   a    cu    g  a           -A   G A       - u  a  u       cu     ag 
gugagc   agggaagaggaag   gag gccu  aaga cg ugGGAAUAGGA  CAU G GGAAAGc c ga gc aaauuuu  acucc  u
||||||   |||||||||||||   ||| ||||  |||| || |||||||||||  ||| | ||||||| | || || |||||||  |||||   
uacucg   uuccuucuccuuc   cuc ugga  uucu gc AUCCUUAUCCU  GUA C CCUUuug g cu cg uuuaaag  ugagg  a
      aau             ---   a    --    a  c           CC   G -       c u  -  -       au     cu 

Annotation confidence High

Genome context

11: 7810709-7810885 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR2118q

Mature osa-miR2118q-5p

• Accession: MIMAT0056129
• Description: Oryza sativa osa-miR2118q-5p mature miRNA
• Sequence: 43 - GGAAUAGGAACAUGGAGGAAAG - 64
• Evidence: experimental ; unknown

Mature osa-miR2118q-3p

• Accession: MIMAT0011756
• Description: Oryza sativa osa-miR2118q-3p mature miRNA
• Sequence: 118 - UUCCCGAUGCCUCCUAUUCCUA - 139
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440