Stem-loop osa-MIR2118q

Accession

MI0011267

Description

Oryza sativa osa-MIR2118q precursor miRNA

Literature search

28 open access papers mention osa-MIR2118q
(169 sentences)

Sequence

19 reads, 0 reads per million, 2 experiments

gugagcagggaagaggaagaaagagagccucuaagagcgaugggaauaggaacauggaggaaagccugaagcuaaauuuucuacuccaguaucggaguuagaaauuugcucugcguuUUCCCGAUGCCUCCUAUUCCUAccgaucuuagguacuccuuccucuuccuuuaagcucau
(((((((((((((((((((...(((.((((..((((.((.(((((((((((.(((.(.((((((((.((.((.(((((((..(((((......)))))..))))))))))).).)))))))).)))..))))))))))).)).)))))))).))))))))))))))))...))))))

Structure

      ---             aaa   a    cu    g  a           -a   g a       - u  a  u       cu     ag 
gugagc   agggaagaggaag   gag gccu  aaga cg ugggaauagga  cau g ggaaagc c ga gc aaauuuu  acucc  u
||||||   |||||||||||||   ||| ||||  |||| || |||||||||||  ||| | ||||||| | || || |||||||  |||||   
uacucg   uuccuucuccuuc   cuc ugga  uucu gc AUCCUUAUCCU  GUA C CCUUuug g cu cg uuuaaag  ugagg  a
      aau             ---   a    --    a  c           CC   G -       c u  -  -       au     cu 

Annotation confidence Not enough data

Genome context

Chr11: 7810709-7810885 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR2118q

Mature osa-miR2118q

• Accession: MIMAT0011756
• Description: Oryza sativa osa-miR2118q mature miRNA
• Sequence: 118 - UUCCCGAUGCCUCCUAUUCCUA - 139
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440