Stem-loop osa-MIR2118r

Accession

MI0011268

Description

Oryza sativa osa-MIR2118r precursor miRNA

Literature search

28 open access papers mention osa-MIR2118r
(157 sentences)

Sequence

14635 reads, 131.0 reads per million, 122 experiments

gugagucgggaagaggaagaaaagagggucuaagagcagugGGCAUGGGAACAUGGAGGAAgaacauguacuuuucuucccucuaaauuuagagguugagauuugcuaagcauuuUUCCCAAUGCCUCCCAUGCCUAcaguucuuagguacuccuuccccuuccuguuggcuugc
(((((((((((((.(((((....(((..(((((((((.((((((((((((.((((((((((......(((..((((...((((((....))))))..))))..)))......)))))))..)))..)))))))))))).)))))))))..)))))))).))))))...)))))))

Structure

       ---      a     aaaa   gg         a            -A   --       gaacau   cu    uuc      a 
gugaguc   gggaag ggaag    gag  ucuaagagc gugGGCAUGGGA  CAU  GGAGGAA      gua  uuuc   ccucua a
|||||||   |||||| |||||    |||  ||||||||| ||||||||||||  |||  |||||||      |||  ||||   ||||||  
cguucgg   uccuuc ccuuc    cuc  ggauucuug cAUCCGUACCCU  GUA  CCUUuuu      cgu  agag   ggagau u
       uug      c     ----   au         a            CC   AC       acgaau   uu    -uu      u 

Annotation confidence High

Genome context

11: 7810223-7810397 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR2118r

Mature osa-miR2118r-5p

• Accession: MIMAT0056130
• Description: Oryza sativa osa-miR2118r-5p mature miRNA
• Sequence: 42 - GGCAUGGGAACAUGGAGGAA - 61
• Evidence: experimental ; unknown

Mature osa-miR2118r-3p

• Accession: MIMAT0011757
• Description: Oryza sativa osa-miR2118r-3p mature miRNA
• Sequence: 116 - UUCCCAAUGCCUCCCAUGCCUA - 137
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440