Stem-loop osa-MIR2275a

Accession

MI0011269

Description

Oryza sativa osa-MIR2275a precursor miRNA

Literature search

14 open access papers mention osa-MIR2275a
(65 sentences)

Sequence

479 reads, 5.0 reads per million, 50 experiments

agcuuagcuaggcaucacaaaccauaaucuuuggcaguugaauuugAGGUUUGGAUGGGACCAAAUCUuacugcagacuugcagauuaacgcaagaUUUGGUUUCCUCCAAUAUCUCAuguucaguugucagacagugaauaauggugcaauuagugagcu
((((((.((((((((((.....(((....((((((((((((((.(((((((((((.(((((((((((((.(((((....)))))........))))))))))))).))))).)))))).))))))))))))))..))).....))))))..))))))))))

Structure

      g    --      caaac   aauc              u      -     U             -------a     g 
agcuua cuag  gcauca     cau    uuuggcaguugaau ugAGGU UUGGA GGGACCAAAUCUu        cugca a
|||||| ||||  ||||||     |||    |||||||||||||| |||||| ||||| |||||||||||||        |||||  
ucgagu gauu  cguggu     gug    agacuguugacuug ACUCUA AACCU CUUUGGUUUagaa        gacgu c
      -    aa      aauaa   --ac              u      U     C             cgcaauua     u 

Annotation confidence High

Genome context

8: 1204975-1205135 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR2275a

Mature osa-miR2275a-5p

• Accession: MIMAT0056131
• Description: Oryza sativa osa-miR2275a-5p mature miRNA
• Sequence: 47 - AGGUUUGGAUGGGACCAAAUCU - 68
• Evidence: experimental ; unknown

Mature osa-miR2275a-3p

• Accession: MIMAT0011758
• Description: Oryza sativa osa-miR2275a-3p mature miRNA
• Sequence: 97 - UUUGGUUUCCUCCAAUAUCUCA - 118
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440