Stem-loop osa-MIR2275b

Accession

MI0011270

Description

Oryza sativa osa-MIR2275b precursor miRNA

Literature search

14 open access papers mention osa-MIR2275b
(65 sentences)

Sequence

413 reads, 5.0 reads per million, 40 experiments

uggcagcugaauuugAGGUUUGGAUGGGACCAAAUCUuacugcagacuugcagagcaagacaagaUUUGGUUUCCUCCAAUAUCUCAuguucaguuguca
((((((((((((.(((((((((((.(((((((((((((.(((((....)))))........))))))))))))).))))).)))))).))))))))))))

Structure

            u      -     U             -------a     g 
uggcagcugaau ugAGGU UUGGA GGGACCAAAUCUu        cugca a
|||||||||||| |||||| ||||| |||||||||||||        |||||  
acuguugacuug ACUCUA AACCU CUUUGGUUUagaa        gacgu c
            u      U     C             cagaacga     u 

Annotation confidence High

Genome context

8: 1202490-1202589 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR2275b

Mature osa-miR2275b-5p

• Accession: MIMAT0056132
• Description: Oryza sativa osa-miR2275b-5p mature miRNA
• Sequence: 16 - AGGUUUGGAUGGGACCAAAUCU - 37
• Evidence: experimental ; unknown

Mature osa-miR2275b-3p

• Accession: MIMAT0011759
• Description: Oryza sativa osa-miR2275b-3p mature miRNA
• Sequence: 66 - UUUGGUUUCCUCCAAUAUCUCA - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440