Stem-loop zma-MIR2118c

Accession

MI0011273

Description

Zea mays zma-MIR2118c precursor miRNA

Literature search

11 open access papers mention zma-MIR2118c
(13 sentences)

Sequence

7 reads, 37 reads per million, 2 experiments

ggaagaggaaguaaagaugaucuaagagcagugggcaugggaacauggaggaaggccuaugagguugaaaccucauuuugugucUUCCUAAUGCCUCCCAUUCCUAucguucuuaggugauccuuccucuugc
(.(((((((((....(((.((((((((((.(((((.((((((.(((..(((((((((.(((((((....)))))))...).)))))))).)))..)))))).))))).)))))))))).)))))))))))).)

Structure

 g         uaaa   g          a     c      -a   gg        - --u       u 
g aagaggaag    gau aucuaagagc guggg auggga  cau  aggaaggc c   augaggu g
| |||||||||    ||| |||||||||| ||||| ||||||  |||  |||||||| |   |||||||  
c uucuccuuc    cua uggauucuug uAUCC UACCCU  GUA  UCCUUcug g   uacucca a
 g         ----   g          c     U      CC   -A        u uuu       a 

Annotation confidence Not enough data

Genome context

chr10: 118813614-118813746 [-]

Mature zma-miR2118c

• Accession: MIMAT0011762
• Description: Zea mays zma-miR2118c mature miRNA
• Sequence: 85 - UUCCUAAUGCCUCCCAUUCCUA - 106
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440