Stem-loop zma-MIR2118e

Accession

MI0011275

Description

Zea mays zma-MIR2118e precursor miRNA

Literature search

11 open access papers mention zma-MIR2118e
(13 sentences)

Sequence

27 reads, 141 reads per million, 5 experiments

ccaaggaaguggaagaaagagaaugucuaagagcagugggaauggaaacaugaaggaaagcaugaacuauguucuuuuuucugaauguuUUCCUGAUGUCUCCCAUUCCUAcgguucuuaggugcuccuuccucuuccuuugg
(((((((((.(((((...(((....(((((((((.(((((((((((.((((..((((((((((((((...))))..........)))))))))).)))).).)))))))))).)))))))))..)))))))).))))).))))

Structure

    -     u     aaa   aaug         a          - a    ga          ----------    u 
ccaa ggaag ggaag   gag    ucuaagagc gugggaaugg a acau  aggaaagcau          gaac  
|||| ||||| |||||   |||    ||||||||| |||||||||| | ||||  ||||||||||          |||| a
gguu ccuuc ccuuc   cuc    ggauucuug cAUCCUUACC U UGUA  UCCUUuugua          cuug  
    u     u     ---   --gu         g          C C    -G          agucuuuuuu    u 

Annotation confidence Not enough data

Genome context

chr10: 118740501-118740643 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR2118e

Mature zma-miR2118e

• Accession: MIMAT0011764
• Description: Zea mays zma-miR2118e mature miRNA
• Sequence: 90 - UUCCUGAUGUCUCCCAUUCCUA - 111
• Evidence: not_experimental

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440