Stem-loop dme-mir-2280

Accession

MI0011290

Description

Drosophila melanogaster dme-mir-2280 precursor miRNA

Sequence

25 reads, 3 reads per million, 11 experiments

ucguuuaagaugcugugaauaucccguuuUCUUAGCUUGGCAAUAAAAUAUuauucacagaaacuaguAAUUUACUUCCAAGCUAACUGAaggggauauucagugcaaccacgga
((((......(((..((((((((((.(((..(((((((((...((((.((((((((...)))..))))).))))...)))))))))..))).))))))))))..)))...)))).

Structure

-    uuaaga   ug          g   UC         CAA    A     --   a 
 ucgu      ugc  ugaauauccc uuu  UUAGCUUGG   UAAA UAUua  uuc  
 ||||      |||  |||||||||| |||  |||||||||   |||| |||||  ||| c
 ggca      acg  acuuauaggg aAG  AAUCGAACC   AUUU Augau  aag  
a    ---cca   ug          g   UC         UUC    A     ca   a 

Annotation confidence Not enough data

Genome context

chr2L: 1831685-1831799 [-]

Mature dme-miR-2280-5p

• Accession: MIMAT0011786
• Description: Drosophila melanogaster dme-miR-2280-5p mature miRNA
• Sequence: 30 - UCUUAGCUUGGCAAUAAAAUAU - 51
• Evidence: experimental ; 454 [1]

Mature dme-miR-2280-3p

• Accession: MIMAT0011787
• Description: Drosophila melanogaster dme-miR-2280-3p mature miRNA
• Sequence: 69 - AAUUUACUUCCAAGCUAACUGA - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19541914
   Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line
   "Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC"
   "Genome Res (2009) 19:1776-1785