Stem-loop bdi-MIR1135

Accession

MI0011576

Description

Brachypodium distachyon bdi-MIR1135 precursor miRNA

Literature search

2 open access papers mention bdi-MIR1135
(3 sentences)

Sequence

12673 reads, 133.0 reads per million, 21 experiments

aggagcauaauuaguacuuccuccgaccgguauuacuugucucaaauuugcccaaauACGGAUGUAUCUAUGUGUAAAAcgugucuagauacauguaauaUUUCGACAAGUAAUUCCGACCGGAgggagugccauaau
.............((((((((((((..(((.((((((((((......((((((......))((((((((((((.....))))....))))))))))))......)))))))))).)))..))))))))))))......

Structure

aggagcauaauua            ac   u          ucaaau    ccaaauACGG        ----    G 
             guacuuccuccg  cgg auuacuuguc      uugc          AUGUAUCU    AUGU U
             ||||||||||||  ||| ||||||||||      ||||          ||||||||    |||| A
             cgugagggAGGC  GCC UAAUGAACAG      aaug          uacauaga    ugcA A
-------uaauac            CA   U          CUUUau    ----------        ucug    A 

Annotation confidence Low

Genome context

2: 24701180-24701317 [+]

Mature bdi-miR1135-5p

• Accession: MIMAT0056983
• Description: Brachypodium distachyon bdi-miR1135-5p mature miRNA
• Sequence: 58 - ACGGAUGUAUCUAUGUGUAAAA - 79
• Evidence: experimental ; unknown

Mature bdi-miR1135-3p

• Accession: MIMAT0012191
• Description: Brachypodium distachyon bdi-miR1135-3p mature miRNA
• Sequence: 101 - UUUCGACAAGUAAUUCCGACCGGA - 124
• Evidence: not_experimental

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669