Stem-loop dme-mir-307b

Accession

MI0011577

Description

Drosophila melanogaster dme-mir-307b precursor miRNA

Literature search

2 open access papers mention dme-mir-307b
(9 sentences)

Sequence

22 reads, 6 reads per million, 14 experiments

uaguuucguggauacucuguccugcuaucgcUCACUCAAGGAGGUUGUGAUGGauaccauaucgaaauaacaUCACACCCAGGUUGAGUGAGUcaaagcaagacaaaaugcugcuaacuu
.((((..((((......((((.((((...((((((((((...((.(((((((..................))))))).))...))))))))))...)))).)))).....)))).)))).

Structure

u    uc    auacuc    c    auc          GGA  U       Gauaccau 
 aguu  gugg      uguc ugcu   gcUCACUCAA   GG UGUGAUG        a
 ||||  ||||      |||| ||||   ||||||||||   || |||||||         
 ucaa  cguc      acag acga   UGAGUGAGUU   CC ACACUac        u
u    -u    -guaaa    a    aac          GGA  C       aauaaagc 

Annotation confidence Not enough data

Genome context

chr2R: 9621234-9621353 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-307b

Mature dme-miR-307b-5p

• Accession: MIMAT0012194
• Description: Drosophila melanogaster dme-miR-307b-5p mature miRNA
• Sequence: 32 - UCACUCAAGGAGGUUGUGAUGG - 53
• Evidence: experimental ; Illumina [1]

Mature dme-miR-307b-3p

• Accession: MIMAT0012195
• Description: Drosophila melanogaster dme-miR-307b-3p mature miRNA
• Sequence: 73 - UCACACCCAGGUUGAGUGAGU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9