Stem-loop dme-mir-2498

Accession

MI0011587

Description

Drosophila melanogaster dme-mir-2498 precursor miRNA

Literature search

1 open access papers mention dme-mir-2498
(1 sentences)

Sequence

107 reads, 156 reads per million, 16 experiments

cacauuugccauaaucuccuuaaaauagUAAAGGCUGUUAUGCUUAUUUUUGuguuuuuuacaAAACUGGCAUUCCCGUCUUACUUauuuucagaaaacuuacaccaaagug
(((.((((..........((.((((((((((.(((.(..(((((...(((((((.....)))))))..)))))..).))))))).)))))).))...........)))))))

Structure

   a    -ccauaaucuc  u      -    A   U UU     UAU       u 
cac uuug           cu aaaaua gUAA GGC G  AUGCU   UUUUGug u
||| ||||           || |||||| |||| ||| |  |||||   ||||||| u
gug aaac           ga uuuuaU CAUU CUG C  UACGG   AAAacau u
   -    cacauucaaaa  c      U    -   C CU     -UC       u 

Annotation confidence High

Genome context

chr2R: 20584709-20584820 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from dme-mir-2498

Mature dme-miR-2498-5p

• Accession: MIMAT0012210
• Description: Drosophila melanogaster dme-miR-2498-5p mature miRNA
• Sequence: 29 - UAAAGGCUGUUAUGCUUAUUUUUG - 52
• Evidence: experimental ; Illumina [1]

Mature dme-miR-2498-3p

• Accession: MIMAT0012211
• Description: Drosophila melanogaster dme-miR-2498-3p mature miRNA
• Sequence: 64 - AAACUGGCAUUCCCGUCUUACUU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9