Stem-loop mtr-MIR2585a

Accession

MI0011796

Description

Medicago truncatula mtr-MIR2585a precursor miRNA

Sequence

aauuaggggucguuuaaaaauuggucccuguauucgcuaaucauugcaaacuaaccuugcaaucauuaaucauuuaaaauuucaucauuugaccaacuuaaucaccgccacgucacuuauuugaugacgucgcaaucacugccacacaugaaauuccaauuuugcccuuaagaagaggacaaaauauugaagaaagaauuggaacccagggguaaaauuggaauuuuauguggcguggcagugauuaaguggggagagagacgaaauuuuaaaugauuaaacaaugcaaggguaaauuacCAGGAUUAGCGAUUACAGGGACcaauuuuuaaacgaccccuaauug
((((((((((((((((((((((((((((((((.(((((((((.(((........(((((((....((((((((((((((((((.((.(((..((.((((((((((.((((((((..............((.(((.....))).))((((((((((((((((((((((((.....(.((....(((.((......)).)))....))))))))))))))))))))))))))))))))))).)))))))))).))..))).)).))))))))))))))))))....))))))).........)))))))))))).)))))))))))))))))))))))))))))))).

Structure

-                                u         a   -caaacuaa       auca                  a  a   ga  a          c        acuuauuugaugacgucgcaaucacugccac                        aagaa a  acaa   a  ga 
 aauuaggggucguuuaaaaauuggucccugua ucgcuaauc uug         ccuugca    uuaaucauuuaaaauuuc uc uuu  cc acuuaaucac gccacguc                               acaugaaauuccaauuuugcccuu     g gg    aau uu  a
 |||||||||||||||||||||||||||||||| ||||||||| |||         |||||||    |||||||||||||||||| || |||  || |||||||||| ||||||||                               ||||||||||||||||||||||||     | ||    ||| ||   
 uuaauccccagcaaauuuuuaacCAGGGACAU AGCGAUUAG GAC         ggaacgu    aauuaguaaauuuuaaag ag gag  gg ugaauuagug cggugcgg                               uguauuuuaagguuaaaaugggga     c cc    uua ga  g
g                                U         -   cauuaaaug       aaca                  c  a   ag  g          a        -------------------------------                        ----- -  aagg   a  aa 

Annotation confidence Not enough data

Genome context

chr4: 15526071-15526416 [-]

Mature mtr-miR2585a

• Accession: MIMAT0013249
• Description: Medicago truncatula mtr-miR2585a mature miRNA
• Sequence: 301 - CAGGAUUAGCGAUUACAGGGAC - 322
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796