Stem-loop mtr-MIR2585b

Accession

MI0011797

Description

Medicago truncatula mtr-MIR2585b precursor miRNA

Sequence

uaggggccguuuaaaaauugguccauguauucgcuaauccuugcaaacuagucuugcaaucauuaaucauuuaaaauuucaucauuugaccaacuuaaucacugccacacauaaaauuccaauucugcccuuaagaagaugacaaaauauugaagaaagaauuggaaaccuagggguaaaauuggaauuucauguguaacagugauugacacgucaucaaauucuugacguggcagugauuaaguggggagagggacgaaauuuuaaaugauuaaacaaugcaguggugaauuguCAGGAUUAGCGAUUACAGGGACcaauuuuuaaacgaccccu
.(((((.(((((((((((((((((.((((.(((((((((((.((((((((...(((((....((((((((((((((((((.((.(((..((.((((((((((((((((((((.(((((((((((.((((((((.....................................)))))))).))))))))))).))))))....((.....))((((((.........)))))))))))))))))))).))..))).)).))))))))))))))))))....)))))))))...)))).))))))))))).)))).))))))))))))))))).)))))

Structure

u     c                 a    u           u    ---    guc     auca                  a  a   ga  a              ----------------------------------      a           c        agaagaugacaaaauau 
 agggg cguuuaaaaauuggucc ugua ucgcuaauccu gcaa   acua   uugca    uuaaucauuuaaaauuuc uc uuu  cc acuuaaucacugcc                                  acacau aaauuccaauu ugcccuua                 u
 ||||| ||||||||||||||||| |||| ||||||||||| ||||   ||||   |||||    |||||||||||||||||| || |||  || ||||||||||||||                                  |||||| ||||||||||| ||||||||                 g
 ucccc gcaaauuuuuaacCAGG ACAU AGCGAUUAGGA uguu   uggu   gacgu    aauuaguaaauuuuaaag ag gag  gg ugaauuagugacgg                                  ugugua uuuaagguuaa auggggau                 a
-     a                 G    U           C    aag    ---     aaca                  c  g   ag  g              ugcaguucuuaaacuacugcacaguuagugacaa      c           a        ccaaagguuaagaaaga 

Annotation confidence Not enough data

Genome context

chr7: 19585618-19585953 [+]

Mature mtr-miR2585b

• Accession: MIMAT0013250
• Description: Medicago truncatula mtr-miR2585b mature miRNA
• Sequence: 296 - CAGGAUUAGCGAUUACAGGGAC - 317
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796