miRBase entry: mtr-MIR2586a

Stem-loop mtr-MIR2586a


Accession
MI0011798
Description
Medicago truncatula mtr-MIR2586a precursor miRNA


Sequence

42047 reads, 340.0 reads per million, 111 experiments
augacaaccuaugaAGCACGGAUACGGACACGGACACCggacacgacacagacacgccgacacaacuaauaauuugaaaauaucacauuaucugguguAAUUACAAGUGUCGGUGUCaugucgguaucggacacgacacguguccgacacugggacacgccuaauccgaggaguguccgugcuucauagaugacaa
........(((((((((((((((((...(.((((.((((.(((.(((((.(((((.........(((((((((.(((.....))).))))).))))..........))))).))))).))))))).(((((((((...)))))))))...((((.....)))).)))).)..))))))))))))))))).......

Structure
augacaac                 GGA A    --------------------------------------C    g   c     a     -gccgacaca    -     u   a 
        cuaugaAGCACGGAUAC   C CGGA                                       ACCg aca gacac gacac          acua auaau uga a
        |||||||||||||||||   | ||||                                       |||| ||| ||||| |||||          |||| ||||| ||| a
        gauacuucgugccugug   g gccu                                       uggc ugu CUGUG CUGUG          uggu uauua acu u
-aacagua                 -ag a    aauccgcacagggucacagccugugcacagcacaggcua    -   a     G     AACAUUAAug    c     c   a 


Annotation confidence Low
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Genome context
chr2: 20061144-20061339 [+]

Database links

Mature mtr-miR2586a-5p

Accession MIMAT0054799
Description Medicago truncatula mtr-miR2586a-5p mature miRNA
Sequence 15 - AGCACGGAUACGGACACGGACACC - 38
Evidence experimental
unknown

Mature mtr-miR2586a-3p

Accession MIMAT0013251
Description Medicago truncatula mtr-miR2586a-3p mature miRNA
Sequence 99 - AAUUACAAGUGUCGGUGUC - 117
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796