miRBase entry: mtr-MIR2588a

Dead hairpin entry

Stem-loop mtr-MIR2588a


Accession
MI0011805
Description
Medicago truncatula mtr-MIR2588a precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

75808 reads, 588.0 reads per million, 111 experiments
agauagguccuuuaacuuUGUAACACUGUGCAACUAAGUCCUuccguuaacaaaacauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguuucaucgucuaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuguucacuuuacuugaauaaauaucaagcuuauuguugcaauaacacaaguuaaagccaacaacaugcaaguuacaucagcaaucuucaaaaauaaucauaacauuuuccaauuaauaacauguuuuugccuuuugcaugccacaucacagacuucagagucacgucagcguuuuuuugacggugaguuaacggaaggacuuaguuguauacuguUACAAAGUUAAAGGACCUAUCUG
(((((((((((((((((((((((((.(((((((((((((((((((((((((......((((......))))..............((((((...))))))................(((((((((((((((.(((.........................)))))))))).(((((....)).)))..(((((.......)))))....(((((((..((((....))))..).))))))((((((((...((..((((.......................................))))..))...))))))))..........((((....))))(((....)))......))))))))))))))))))))))))))))))))).))))))))))))))))))))))))).

Structure
-                         C                         aaaacauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguu        uaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuguucacuuuacuugaauaaauaucaagcuuauuguugcaauaacacaaguuaaagccaacaa        uua  uc    aucuucaaaaauaaucau 
 agauagguccuuuaacuuUGUAACA UGUGCAACUAAGUCCUuccguuaac                                                                 ucaucguc                                                                                                                    caugcaag   ca  agca                  a
 ||||||||||||||||||||||||| |||||||||||||||||||||||||                                                                 ||||||||                                                                                                                    ||||||||   ||  ||||                  a
 UCUAUCCAGGAAAUUGAAACAUugu auauguugauucaggaaggcaauug                                                                 aguggcag                                                                                                                    guacguuu   gu  uugu                  c
G                         c                         -----------------------------------------------------------------        ------------------------------------------------------------------------------uuuuuuugcgacugcacugagacuucagacacuacacc        ucc  uu    acaauaauuaaccuuuua