Stem-loop mtr-MIR2588b

Accession

MI0011806

Description

Medicago truncatula mtr-MIR2588b precursor miRNA

Sequence

agauaaguccuuuaacuuugUAACACUGUGCAACUAAGUCCuuccguuaacaaaauauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguuucaucgucuaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuauucacuuuacuugauuaaauaucaagcuuauuguugcaauaacauaaguuaaagccaacaacaugcaaguuacauuagcaaucuucaaaaauaaucauaacauuuuccaauuaauaacauguuuuugccuuuugcaugccacaucacagacuucacagccacgucagcguuuuuuugacggugaguuaacggaaggacuuaguuguauacuguuacaaaguuaaaggaccuaucug
(((((.(((((((((((((((((((.(((((((((((((((((((((((((......((((......))))..............((((((...))))))................(((((((((((((((.(((.........................)))))))))).(((((....)).)))..((((((.....))))))....(((((((..((((....))))..).))))))((((((((...((..((((.......................................))))..))...))))))))..........(((...........)))...........))))))))))))))))))))))))))))))))).))))))))))))))))))).))))).

Structure

-     a                   C                         aaaauauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguu        uaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuauucacuuuacuugauuaaauaucaagcuuauuguugcaauaacauaaguuaaagccaacaa        uua  uu    aucuucaaaaauaaucau 
 agaua guccuuuaacuuugUAACA UGUGCAACUAAGUCCuuccguuaac                                                                 ucaucguc                                                                                                                    caugcaag   ca  agca                  a
 ||||| ||||||||||||||||||| |||||||||||||||||||||||||                                                                 ||||||||                                                                                                                    ||||||||   ||  ||||                  a
 ucuau caggaaauugaaacauugu auauguugauucaggaaggcaauug                                                                 aguggcag                                                                                                                    guacguuu   gu  uugu                  c
g     c                   c                         -----------------------------------------------------------------        ------------------------------------------------------------------------------uuuuuuugcgacugcaccgacacuucagacacuacacc        ucc  uu    acaauaauuaaccuuuua 

Annotation confidence Not enough data

Genome context

chr8: 14068100-14068514 [-]

Mature mtr-miR2588b

• Accession: MIMAT0013259
• Description: Medicago truncatula mtr-miR2588b mature miRNA
• Sequence: 21 - UAACACUGUGCAACUAAGUCC - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796