Stem-loop mtr-MIR2589

Accession

MI0011807

Description

Medicago truncatula mtr-MIR2589 precursor miRNA

Sequence

73637 reads, 597.0 reads per million, 111 experiments

uguuggugauuaagcAAACGGUGAAGCACACAUGGAUGCcacaccugacuuuuuuauuuuuuguuaaauauauuuuuaaucccuauaaaauuaagguauuuuaaguuuuuauuccuuacaaaaauauuaugcacucaguauuagucccugcucaauucaacuauuaaaauuaaacaaauuugaauugagcagagacuaauacugagugcauaguauuuuuguaaugacuaaaacaacuauuaaaauuaaguaaggacuaaacuuaaaaugucucaAUUUUAUAGGGACUAAAAAcauauuuaacccaacaaaaaaaagucagauguggcauccacgugugcuucaccguuugcucaaucaacaacg
.((((.(((((.(((((((((((((((((((.(((((((((((.(((((((((((.......(((((((((.((((((.(((((((((((((.(((((((((((((((....((((((((((((((((((((((((((((((((((.(((((((((((((...................))))))))))))).)))))))))))))))))))))))))))))).............................))))..))))))))))))))).))))))))))))).)))))).))))))))).......))))))))))).))))))))))).))))))))))))))))))).))))).)))).

Structure

u    g     a                   A           c           auuuuuu         a      a             a               uuau    -----------------------------                              c             cuauuaaa 
 guug ugauu agcAAACGGUGAAGCACAC UGGAUGCcaca cugacuuuuuu       guuaaauau uuuuua ucccuauaaaauu agguauuuuaaguuu    uccu                             uacaaaaauauuaugcacucaguauuaguc cugcucaauucaa        a
 |||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||       ||||||||| |||||| ||||||||||||| |||||||||||||||    ||||                             |||||||||||||||||||||||||||||| |||||||||||||        u
 caac acuaa ucguuugccacuucgugug accuacggugu gacugaaaaaa       caauuuaua AAAAAU AGGGAUAUUUUAa ucuguaaaauucaaa    agga                             auguuuuuaugauacgugagucauaaucag gacgaguuaaguu        u
g    a     c                   c           a           aacaacc         c      C             c               --uc    augaauuaaaauuaucaacaaaaucagua                              a             uaaacaaa 

Annotation confidence Low

Genome context

chr3: 41740729-41741094 [+]

Mature mtr-miR2589-5p

• Accession: MIMAT0054808
• Description: Medicago truncatula mtr-miR2589-5p mature miRNA
• Sequence: 16 - AAACGGUGAAGCACACAUGGAUGC - 39
• Evidence: experimental ; unknown

Mature mtr-miR2589-3p

• Accession: MIMAT0013260
• Description: Medicago truncatula mtr-miR2589-3p mature miRNA
• Sequence: 276 - AUUUUAUAGGGACUAAAAA - 294
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796