Stem-loop mtr-MIR2590b

Accession

MI0011809

Description

Medicago truncatula mtr-MIR2590b precursor miRNA

Literature search

1 open access papers mention mtr-MIR2590b
(1 sentences)

Sequence

41070 reads, 378.0 reads per million, 111 experiments

agaaaauuucaagAAUGACAUGGCAGAAUAAUCACCCuuaaauuuuaucaagaaauauucaugaaauuaauguuaaccaauaaaaucucagccugaccggaaaucauggggugguggguguuauguaucuuuuuuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaauuuuu
..((((.((((((((((((((((((.((((((((((.(((.(((((((((.(((...))).))).....................(((((((((.((((............)))))))).((((..(((((((.....)))))))..)))).))))).)))))).))).)))))))))).)))))))))))))))))).))))

Structure

ag    u                  G          C   a      ucaagaaauauucaugaaauuaauguuaaccaauaaaa     gccugaccggaaaucaugggguggugggug    gu       u 
  aaaa uucaagAAUGACAUGGCA AAUAAUCACC uua auuuua                                      ucuca                              uuau  aucuuuu u
  |||| |||||||||||||||||| |||||||||| ||| ||||||                                      |||||                              ||||  ||||||| u
  uuuu aaguucuuacuguaCCGU UUAUUAGUGG AAU UAaagu                                      agagu                              aaua  uagaaag a
--    u                  G          A   C      -------------------------------------c     -----------------------------a    au       u 

Annotation confidence Low

Genome context

chr4: 31149740-31149942 [+]

Mature mtr-miR2590b-5p

• Accession: MIMAT0054810
• Description: Medicago truncatula mtr-miR2590b-5p mature miRNA
• Sequence: 14 - AAUGACAUGGCAGAAUAAUCACCC - 37
• Evidence: experimental ; unknown

Mature mtr-miR2590b-3p

• Accession: MIMAT0013262
• Description: Medicago truncatula mtr-miR2590b-3p mature miRNA
• Sequence: 163 - AUCUAAAGGUGAUUAUUGUGCC - 184
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796