Dead hairpin entry

Stem-loop mtr-MIR2590b

Accession

MI0011809

Description

Medicago truncatula mtr-MIR2590b precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention mtr-MIR2590b
(1 sentences)

Sequence

41070 reads, 378.0 reads per million, 111 experiments

agaaaauuucaagAAUGACAUGGCAGAAUAAUCACCCuuaaauuuuaucaagaaauauucaugaaauuaauguuaaccaauaaaaucucagccugaccggaaaucauggggugguggguguuauguaucuuuuuuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaauuuuu
..((((.((((((((((((((((((.((((((((((.(((.(((((((((.(((...))).))).....................(((((((((.((((............)))))))).((((..(((((((.....)))))))..)))).))))).)))))).))).)))))))))).)))))))))))))))))).))))

Structure

ag    u                  G          C   a      ucaagaaauauucaugaaauuaauguuaaccaauaaaa     gccugaccggaaaucaugggguggugggug    gu       u 
  aaaa uucaagAAUGACAUGGCA AAUAAUCACC uua auuuua                                      ucuca                              uuau  aucuuuu u
  |||| |||||||||||||||||| |||||||||| ||| ||||||                                      |||||                              ||||  ||||||| u
  uuuu aaguucuuacuguaCCGU UUAUUAGUGG AAU UAaagu                                      agagu                              aaua  uagaaag a
--    u                  G          A   C      -------------------------------------c     -----------------------------a    au       u