Stem-loop mtr-MIR2590c

Accession

MI0011810

Description

Medicago truncatula mtr-MIR2590c precursor miRNA

Literature search

1 open access papers mention mtr-MIR2590c
(1 sentences)

Sequence

34312 reads, 312.0 reads per million, 111 experiments

aaaauuuuaagAAUGACAUGGCAGAAUAAUCACCCuuaaauuuuaucaauaaauagucuugaaauuaauguuagccaauaaaaucucagucuagccggaaaucauggggugguggguguuauguauuuuuuauuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCauuucauucuugaauauuu
.....(((((((((((.((((((.((((((((((.(((.(((((((((.....((((((((((((..(((.((.(((.....((((((................))))))..))).)).)))..)))))..........))))))).....)))...)))))).))).)))))))))).)))))).))))))))))).....

Structure

aaaau           C      G          C   a      ---   auaaa       ----------     ua   u  g   auaaa      gucuagc 
     uuuaagAAUGA AUGGCA AAUAAUCACC uua auuuua   uca     uagucuu          gaaau  aug ua cca     aucuca       c
     ||||||||||| |||||| |||||||||| ||| ||||||   |||     |||||||          |||||  ||| || |||     ||||||        
     aaguucuuacu uaCCGU UUAUUAGUGG AAU UAaagu   agu     auuagaa          uuuua  uau gu ggu     uggggu       g
uuuau           u      G          A   C      cag   aaaua       aguauuuauu     ug   u  g   ---gg      acuaaag 

Annotation confidence Low

Genome context

chr5: 36310085-36310286 [-]

Mature mtr-miR2590c-5p

• Accession: MIMAT0054811
• Description: Medicago truncatula mtr-miR2590c-5p mature miRNA
• Sequence: 12 - AAUGACAUGGCAGAAUAAUCACCC - 35
• Evidence: experimental ; unknown

Mature mtr-miR2590c-3p

• Accession: MIMAT0013263
• Description: Medicago truncatula mtr-miR2590c-3p mature miRNA
• Sequence: 162 - AUCUAAAGGUGAUUAUUGUGCC - 183
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796