Stem-loop mtr-MIR2590d

Accession

MI0011811

Description

Medicago truncatula mtr-MIR2590d precursor miRNA

Literature search

1 open access papers mention mtr-MIR2590d
(1 sentences)

Sequence

42546 reads, 399.0 reads per million, 111 experiments

caagaaaauuucaagAAUGACAUGGCAGAAUAAUCACCCuuagauuuuaucaagaaauagucuugaaacuaauguuagccaauaaaaucucagccuggucggaaaucaugggugguggguguuauguauuuuuuuuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaaucuuu
.((((....((((((((((((((((((.((((((((((.((((((((((((((((.....))))))(((....)))..(((........(((.((((((.....)))).)).))))))((.((((.((((..(((((...)))))..)))).)))).)))))))))))).)))))))))).)))))))))))))))))))))).

Structure

c    aaau                  G          C          ucaagaaauagucuugaaacuaauguuagccaauaaaaucucagccuggucggaaaucauggguggugg  g    g    uu     a 
 aaga    uucaagAAUGACAUGGCA AAUAAUCACC uuagauuuua                                                                     gu uuau uauu  uuuuu  
 ||||    |||||||||||||||||| |||||||||| ||||||||||                                                                     || |||| ||||  ||||| u
 uucu    aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaagu                                                                     ca agua auaa  agaaa  
u    ----                  G          A          ---------------------------------------------------------------------  g    a    uu     g 

Annotation confidence Low

Genome context

chr5: 7888321-7888524 [+]

Mature mtr-miR2590d-5p

• Accession: MIMAT0054812
• Description: Medicago truncatula mtr-miR2590d-5p mature miRNA
• Sequence: 16 - AAUGACAUGGCAGAAUAAUCACCC - 39
• Evidence: experimental ; unknown

Mature mtr-miR2590d-3p

• Accession: MIMAT0013264
• Description: Medicago truncatula mtr-miR2590d-3p mature miRNA
• Sequence: 164 - AUCUAAAGGUGAUUAUUGUGCC - 185
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796