Stem-loop mtr-MIR2590e

Accession

MI0011812

Description

Medicago truncatula mtr-MIR2590e precursor miRNA

Literature search

1 open access papers mention mtr-MIR2590e
(1 sentences)

Sequence

29719 reads, 290.0 reads per million, 111 experiments

uaagaaaauuuuaagAAUGACAUGGCAGAAUAAUCACCCuuagauuuuaucaagaaauaguccugaaauuaauguuagccaauaaaaucucagucuggccggaaaucaugggugguggguguuauguauuuuuuuuauuuuuaugaaagauuaauaaaugagauugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaaucuuu
.((((....((((((((((((((((((.((((((((((.(((((((((.(((.((.....)).)))...................(((((((..((.((((...........)))).))..((((..(((((((.((....)).)))))))..)))).)))))))))))))))).)))))))))).)))))))))))))))))))))).

Structure

u    aaau                  G          C         aucaagaaauaguccugaaauuaauguuagccaauaa       gucuggccggaaaucauggguggugggug    gu       u  u 
 aaga    uuuaagAAUGACAUGGCA AAUAAUCACC uuagauuuu                                     aaucuca                             uuau  auuuuuu ua u
 ||||    |||||||||||||||||| |||||||||| |||||||||                                     |||||||                             ||||  ||||||| ||  
 uucu    aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaag                                     uuagagu                             aaua  uagaaag au u
u    ----                  G          A         -------------------------------------       ----------------------------a    au       u  u 

Annotation confidence Low

Genome context

chr7: 27285345-27285553 [+]

Mature mtr-miR2590e-5p

• Accession: MIMAT0054813
• Description: Medicago truncatula mtr-miR2590e-5p mature miRNA
• Sequence: 16 - AAUGACAUGGCAGAAUAAUCACCC - 39
• Evidence: experimental ; unknown

Mature mtr-miR2590e-3p

• Accession: MIMAT0013265
• Description: Medicago truncatula mtr-miR2590e-3p mature miRNA
• Sequence: 169 - AUCUAAAGGUGAUUAUUGUGCC - 190
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796