miRBase entry: mtr-MIR2591

Stem-loop mtr-MIR2591


Accession
MI0011814
Description
Medicago truncatula mtr-MIR2591 precursor miRNA


Sequence

18613 reads, 194.0 reads per million, 111 experiments
aAGGGAACUUCUACGGUACACcugcaaauuaagguguaucgguacucuuacuucaaaaauuuauaaauuaacuaucauuuuuaugaaauaaaaagcuauuuguugauaucuauauuuuagaaaauaucauuucauaagaaaaaaagcaucauuucauuguuuauaaaaaucauacuaauuuuuuuagauuuauuguaaaaaauaaucaaaauucucuauuacgaguacuaaaaauucagaaaaaucaaauuuuauuucgucgauguuuuugauaaauaagauuuaauuauuauaauuauaggugauagaaaacaauuuuucucuuuaaaaaauaacacauuuaacuacuaauuuaaugauuuaguguaccaauacacucauaucuuUGGGUGUACCAUAGAAUUUuccua
.((((((.(((((.(((((((((.........(((((((.(((((.((........(((((..(((((((.......((((((((((((....(((.....)))((((((((.....))))...))))))))))))))))...(((((.........)))))............((((.....))))..(((((......))))).........((((((((((((.......)))).....(((.(((((((((((.(((((.....)))))))))))))))).))).............)))))))).....((((((.......))))))...............)))))))..))))))).))))).))))))).........))))))))).))))).)))))).

Structure
a      C     C         gcaaauuaa       c     u  uacuucaa     ua       acuaucauuuuuaugaaauaaaaagcuauuuguugauaucuauauuuuagaaaauaucauuucauaagaaaaaaagcaucauuucauuguuuauaaaaaucauacuaauuuuuuuagauuuauuguaaaaaauaaucaaaauuc        gaguacuaaaaauucagaaa   c           c     u 
 AGGGAA UUCUA GGUACACcu         gguguau gguac cu        aaauu  uaaauua                                                                                                                                                ucuauuac                    aau aaauuuuauuu gucga g
 |||||| ||||| |||||||||         ||||||| ||||| ||        |||||  |||||||                                                                                                                                                ||||||||                    ||| ||||||||||| ||||| u
 uccuUU AAGAU CCAUGUGGG         ucacaua ccaug ga        uuuag  auuuaau                                                                                                                                                agauagug                    uua uuuagaauaaa uaguu u
a      U     A         Uuucuauac       a     u  --------     ua       ---------------------------------------------------------------------------------------------------------caucaauuuacacaauaaaaaauuucucuuuuuaacaaa        -------gauauuaauauua   a           -     u 


Annotation confidence Low
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Genome context
chr5: 14541103-14541512 [-]

Database links

Mature mtr-miR2591-5p

Accession MIMAT0013267
Description Medicago truncatula mtr-miR2591-5p mature miRNA
Sequence 2 - AGGGAACUUCUACGGUACAC - 21
Evidence experimental
454 [1]

Mature mtr-miR2591-3p

Accession MIMAT0054815
Description Medicago truncatula mtr-miR2591-3p mature miRNA
Sequence 387 - UGGGUGUACCAUAGAAUUU - 405
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796