Stem-loop mtr-MIR2592o

Accession

MI0011822

Description

Medicago truncatula mtr-MIR2592o precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592o
(2 sentences)

Sequence

uggggcaaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGCcaaacaccucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaaaaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuaccu
..(((..(((((((((.((..(((((((((((((((((((((((((.((.(((((((((((((.((((((((((((.(((((((((.....(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).))).....))))))))).)))))))))))).))))))))))))).)))))))))))))))))))))))))))..)).))))))))).)))

Structure

ug   ca         c  ca                         c  a             c            a         gugag   u c         u      c     c  cc  a    g 
  ggg  aauucaaac ug  aaaCAACAGGACUCAAGCAUUUCGC aa caccucauguuuu ccuuugaaaaua uaaauuuuu     gcu g uuuagauga gguauu aagug ca  ga uuga  
  |||  ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||     ||| | ||||||||| |||||| ||||| ||  || |||| g
  ucc  uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaag ggaaacuuuuau auuuaaaaa     cga c aaaucuacu ccauaa uucac gu  cu aacu  
--   -a         a  ag                         -  c             a            a         aaaua   c -         u      -     a  uc  -    u 

Annotation confidence Not enough data

Genome context

chr4: 34969555-34969812 [+]

Mature mtr-miR2592o-3p

• Accession: MIMAT0013275
• Description: Medicago truncatula mtr-miR2592o-3p mature miRNA
• Sequence: 219 - AAAUGCUUGAGUCCUGUUGUU - 239
• Evidence: experimental ; 454 [1], Illumina [2]

Mature mtr-miR2592o-5p

• Accession: MIMAT0020943
• Description: Medicago truncatula mtr-miR2592o-5p mature miRNA
• Sequence: 25 - CAACAGGACUCAAGCAUUUCGC - 46
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010