Stem-loop mtr-MIR2595

Accession

MI0011832

Description

Medicago truncatula mtr-MIR2595 precursor miRNA

Sequence

8234 reads, 92.0 reads per million, 111 experiments

aguuuuugcaauuauaaaagagaUAUAGAGAUGAGAAUGUUACaagucugcaguucuaauuuuauagcuagucuuguccauaacagacuuacagauuuguUACAUUUUCUUCUUUAUGUCUcuuuuaaaaauugcaggcg
....(((((((((.(((((((((((((((((.((((((((.(((((((((.((((.((....)).))))(((((.((.....)))))))..))))))))).)))))))).)))))))))))))))))..)))))))))..

Structure

aguu         -a                 U        U         caguucuaauuuuauagcu     u  c 
    uuugcaauu  uaaaagagaUAUAGAGA GAGAAUGU ACaagucug                   agucu gu c
    |||||||||  ||||||||||||||||| |||||||| |||||||||                   ||||| || a
    ggacguuaa  auuuucUCUGUAUUUCU CUUUUACA uguuuagac                   ucaga ca u
--gc         aa                 U        U         -----------------au     -  a 

Annotation confidence High

Genome context

chr7: 10658083-10658222 [+]

Mature mtr-miR2595-5p

• Accession: MIMAT0054826
• Description: Medicago truncatula mtr-miR2595-5p mature miRNA
• Sequence: 24 - UAUAGAGAUGAGAAUGUUAC - 43
• Evidence: experimental ; unknown

Mature mtr-miR2595-3p

• Accession: MIMAT0013285
• Description: Medicago truncatula mtr-miR2595-3p mature miRNA
• Sequence: 101 - UACAUUUUCUUCUUUAUGUCU - 121
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796