Stem-loop mtr-MIR2598

Accession

MI0011848

Description

Medicago truncatula mtr-MIR2598 precursor miRNA

Sequence

28519 reads, 282.0 reads per million, 111 experiments

ggacuauuucuugauaaaAUCUAAGGGUGAUUAUUCUGCCAUgucauucuugaaauuuuuuuugaaaaaaucuuucuuaauauauagcauugcucuauuuauuaacaaguguuuuuuuuuuuuuugacaaauuuaucaacaaguauuuuagaaagaaaaaaagaacauuuuguauugaauuuuuuauuuuagacuuuuuaaaacguugacuaaauaucuuagaauagcgauaauuaauaaagagcaaugcuauauaucaagaaagauuuuuucaaaaaaauuucaagAAUGACAUGGCAGAAUAAUCACCCuuagauuuuaucaagaaauaguccu
((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((.(((((((((((((((((..(((((((((((((((((((((((((((...((((............))))...)))))))))))))))).))))).............(((((((...)))))))(((((.((((.....))))..))))).....))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).

Structure

-                                                              u               a                 au      -------------------------------------------------------------     -                gac    uuauc 
 ggacuauuucuugauaaaAUCUAAGGGUGAUUAUUCUGCCAUgucauucuugaaauuuuuuu gaaaaaaucuuucuu auauauagcauugcucu  uuauua                                                             acaag uguuuuuuuuuuuuuu   aaau     a
 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||||                                                             ||||| ||||||||||||||||   ||||      
 ccugauaaagaacuauuuuagauuCCCACUAAUAAGACGGUACAGUAAgaacuuuaaaaaaa cuuuuuuagaaagaa uauauaucguaacgaga  aauaau                                                             uguuu acaagaaaaaaagaaa   uuua     a
u                                                              -               c                 --      uaauagcgauaagauucuauaaaucaguugcaaaauuuuucagauuuuauuuuuuaaguua     u                gau    ugaac 

Annotation confidence Low

Genome context

chr4: 37313308-37313643 [+]

Mature mtr-miR2598-5p

• Accession: MIMAT0013301
• Description: Medicago truncatula mtr-miR2598-5p mature miRNA
• Sequence: 19 - AUCUAAGGGUGAUUAUUCUGCCAU - 42
• Evidence: experimental ; 454 [1]

Mature mtr-miR2598-3p

• Accession: MIMAT0054834
• Description: Medicago truncatula mtr-miR2598-3p mature miRNA
• Sequence: 288 - AAUGACAUGGCAGAAUAAUCACCC - 311
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796