Stem-loop mtr-MIR2600a

Accession

MI0011850

Description

Medicago truncatula mtr-MIR2600a precursor miRNA

Sequence

10296 reads, 130.0 reads per million, 111 experiments

cggguacaccuuuuugggugACAUUAGCCAAUCACAAUGCCacaaugcuugugaaagagagagaaacacAAACAUUGUGGCAUUGUGAUUGGCcaaugucacccagguauucu
.((((((......((((((((((((.(((((((((((((((((((((.(((((.............))))).))))))))))))))))))))).)))))))))))))))))).

Structure

c      accuuu            A                     c     aaaga 
 ggguac      uugggugACAUU GCCAAUCACAAUGCCacaaug uugug     g
 ||||||      |||||||||||| ||||||||||||||||||||| |||||     a
 cuuaug      gacccacuguaa CGGUUAGUGUUACGGUGUUAC AAcac     g
u      ------            c                     A     aaaga 

Annotation confidence Low

Genome context

chr7: 6096933-6097045 [+]

Mature mtr-miR2600a-5p

• Accession: MIMAT0013303
• Description: Medicago truncatula mtr-miR2600a-5p mature miRNA
• Sequence: 21 - ACAUUAGCCAAUCACAAUGCC - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2600a-3p

• Accession: MIMAT0054836
• Description: Medicago truncatula mtr-miR2600a-3p mature miRNA
• Sequence: 70 - AAACAUUGUGGCAUUGUGAUUGGC - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796