miRBase entry: mtr-MIR2601

Dead hairpin entry

Stem-loop mtr-MIR2601


Accession
MI0011851
Description
Medicago truncatula mtr-MIR2601 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

17337 reads, 135.0 reads per million, 111 experiments
auuuugguccuuuaaguauuuauuugguaucgcuuuggucccuuaACUAAAAAAAAGAUUGUUUGAGuacuuuaauuuaauuuucguuacauuuuuugguccauuccguuagguuuaauaaaaaauguuaagugugauacacgugucguuuuggcauuggcucuggaaacaUUAAGGGACCAAAGUGAUACcaaauaaauacuuacgggaccaaaag
.((((((((((.((((((((((((((((((((((((((((((((((.............(((((((((....................((((((((((.......((....)).....))))))))))...((((...))))(((((.....)))))..))))...))))))))))))))))))))))))))))))))))))))).)))))))))).

Structure
a          u                                  CUAAAAAAAAGAU     ---    -----------acuuuaauuuaauuuucguu          guccauu  g 
 uuuugguccu uaaguauuuauuugguaucgcuuuggucccuuaA             UGUUU   GAGu                               acauuuuuug       cc u
 |||||||||| ||||||||||||||||||||||||||||||||||             |||||   ||||                               ||||||||||       ||  
 aaaaccaggg auucauaaauaaacCAUAGUGAAACCAGGGAAUU             acaaa   cucg                               uguaaaaaau       gg u
g          c                                  -------------     ggu    guuacgguuuugcugugcacauagugugaau          --aauuu  a