Stem-loop mtr-MIR2601

Accession

MI0011851

Description

Medicago truncatula mtr-MIR2601 precursor miRNA

Sequence

auuuugguccuuuaaguauuUAUUUGGUAUCGCUUUGGUCCCuuaacuaaaaaaaagauuguuugaguacuuuaauuuaauuuucguuacauuuuuugguccauuccguuagguuuaauaaaaaauguuaagugugauacacgugucguuuuggcauuggcucuggaaacauuaagggaccaaagugauaccaaauaaauacuuacgggaccaaaag
.((((((((((.((((((((((((((((((((((((((((((((((.............(((((((((....................((((((((((.......((....)).....))))))))))...((((...))))(((((.....)))))..))))...))))))))))))))))))))))))))))))))))))))).)))))))))).

Structure

a          u                                  cuaaaaaaaagau     ---    -----------acuuuaauuuaauuuucguu          guccauu  g 
 uuuugguccu uaaguauuUAUUUGGUAUCGCUUUGGUCCCuuaa             uguuu   gagu                               acauuuuuug       cc u
 |||||||||| ||||||||||||||||||||||||||||||||||             |||||   ||||                               ||||||||||       ||  
 aaaaccaggg auucauaaauaaaccauagugaaaccagggaauu             acaaa   cucg                               uguaaaaaau       gg u
g          c                                  -------------     ggu    guuacgguuuugcugugcacauagugugaau          --aauuu  a 

Annotation confidence Not enough data

Genome context

chr4: 45064513-45064729 [+]

Mature mtr-miR2601

• Accession: MIMAT0013304
• Description: Medicago truncatula mtr-miR2601 mature miRNA
• Sequence: 21 - UAUUUGGUAUCGCUUUGGUCCC - 42
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796