Stem-loop mtr-MIR2602a

Accession

MI0011852

Description

Medicago truncatula mtr-MIR2602a precursor miRNA

Sequence

acugccacaucacuaauucgaugacguggcaaucacuaccacacaugaaauuccaauuuagcccuuaagaagaggacaaaauauugaagaaagaauuggaaacccagggguaaaauuagaauuucauguaUGGCAGUGAUUGCCACGUCAUcaaauuagugacauagcag
.((((....(((((((((.((((((((((((((((((.(((.(((((((((((.(((((.(((((...........(((....)))..........(((....)))))))).))))).))))))))))).))).)))))))))))))))))).)))))))))....))))

Structure

a    caca         c                  a   c           c     a     ---------uaagaagagga   a 
 cugc    ucacuaauu gaugacguggcaaucacu cca acaugaaauuc aauuu gcccu                    caa a
 ||||    ||||||||| |||||||||||||||||| ||| ||||||||||| ||||| |||||                    |||  
 gacg    agugauuaa cUACUGCACCGUUAGUGA GGU uguacuuuaag uuaaa ugggg                    guu u
-    auac         a                  C   a           a     a     acccaaagguuaagaaagaa   a 

Annotation confidence Not enough data

Genome context

chr5: 13768425-13768594 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2602a

Mature mtr-miR2602a

• Accession: MIMAT0013305
• Description: Medicago truncatula mtr-miR2602a mature miRNA
• Sequence: 131 - UGGCAGUGAUUGCCACGUCAU - 151
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796