Stem-loop mtr-MIR2602b

Accession

MI0011853

Description

Medicago truncatula mtr-MIR2602b precursor miRNA

Sequence

11155 reads, 103.0 reads per million, 111 experiments

acugccacgucacUAAUUCGAUGACGUGGCAAUCACUAccacacaugaaauuccaauuuugcccuuaagaagaggacaaauauugaagaaagaauuggaaacucagggguaaaauuggaauuucauguaUGGCAGUGAUUGCCACGUCAUcaaauuagugacaugccag
.(((.((.((((((((((.((((((((((((((((((.(((.((((((((((((((((((((((((.....(((..(((...((.....))...)))....))))))))))))))))))))))))))).))).)))))))))))))))))).)))))))))).)).)))

Structure

a   c  c          C                  A   c                        aagaa   --ga   aua  g 
 cug ca gucacUAAUU GAUGACGUGGCAAUCACU cca acaugaaauuccaauuuugcccuu     gag    caa   uu a
 ||| || |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||     |||    |||   || a
 gac gu cagugauuaa cUACUGCACCGUUAGUGA GGU uguacuuuaagguuaaaaugggga     cuc    guu   aa g
-   c  a          a                  C   a                        -----   aaag   aag  a 

Annotation confidence Low

Genome context

chr5: 38414668-38414836 [-]

Mature mtr-miR2602b-5p

• Accession: MIMAT0054839
• Description: Medicago truncatula mtr-miR2602b-5p mature miRNA
• Sequence: 14 - UAAUUCGAUGACGUGGCAAUCACUA - 38
• Evidence: experimental ; unknown

Mature mtr-miR2602b-3p

• Accession: MIMAT0013306
• Description: Medicago truncatula mtr-miR2602b-3p mature miRNA
• Sequence: 130 - UGGCAGUGAUUGCCACGUCAU - 150
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796