Stem-loop mtr-MIR2603

Accession

MI0011854

Description

Medicago truncatula mtr-MIR2603 precursor miRNA

Sequence

23672 reads, 219.0 reads per million, 111 experiments

uuggucccugcacuuuuuuguuugguAUUGGUCCCUGCACUUUGUAAAAAuauugguauugguuccucuguuaacuuucuguuaaaaaaaaaacacaaaaccaacggagugcggcccaaucauuucacgcccacguggcaccaauaucaauauuuuuacaaauugcagggacaaauaccaauauuuuacaaagugcagggcccaauaccaauaguuuuggguuuuuuuuuuacagaaaguuaauagagggaccaauaccaauauuuuuacaaagugcaaggaccaAUUCCAAACAAAAAAAAGUGUAGGgaccaau
(((((((((((((((((((((((((.((((((((.(((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((.((((((....(((.((.(((((........((((....))))((((.......((((((.............((........)))))))).......)))).))))))).).))....)))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))).)))))))..)))))))))))))))))).

Structure

-                  --       u        C                                               u           a      caac  - g  c     aaucauuucacgcccacgug    caauauc      uuuacaaauugca  gac 
 uuggucccugcacuuuuu  uguuugg AUUGGUCC UGCACUUUGUAAAAAuauugguauugguuccucuguuaacuuucugu aaaaaaaaaac caaaac    gg a ug ggccc                    gcac       aauauu             gg   a
 ||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    || | || |||||                    ||||       ||||||             ||    
 aaccagGGAUGUGAAAAA  ACAAACC UAaccagg acgugaaacauuuuuauaaccauaaccagggagauaauugaaagaca uuuuuuuuuug guuuug    cc u ac ccggg                    cgug       uuauaa             cc   a
u                  AA       U        a                                               -           g      auaa  a a  -     -------------------a    aaacauu      -------------  aua 

Annotation confidence Low

Genome context

chr4: 38174285-38174600 [+]

Mature mtr-miR2603-5p

• Accession: MIMAT0013307
• Description: Medicago truncatula mtr-miR2603-5p mature miRNA
• Sequence: 27 - AUUGGUCCCUGCACUUUGUAAAAA - 50
• Evidence: experimental ; 454 [1]

Mature mtr-miR2603-3p

• Accession: MIMAT0054840
• Description: Medicago truncatula mtr-miR2603-3p mature miRNA
• Sequence: 286 - AUUCCAAACAAAAAAAAGUGUAGG - 309
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796