miRBase entry: mtr-MIR2604

Stem-loop mtr-MIR2604


Accession
MI0011855
Description
Medicago truncatula mtr-MIR2604 precursor miRNA


Sequence

44666 reads, 429.0 reads per million, 111 experiments
guuugcuagaacacauccacuaauuuuUAUGUGGGAGUGUUUUAGCAAAGCuauaacuuagaguguauuuaaccacuguuuaguuauuuauuugcuaaaauacuccuucuaaaaaauaaguggguguauucuagcaaaugccuauaagAUUUGCUAGAACACACCCACUuguuuuuuuagaaaguguguuauagcaacauacaccuuaagguguauuuauuaauuuuuuaguuauaacuugcuaaaacacucccacauaaaaacuaguggguguguucuagaaaauu
((((.(((((((((((((((((.(((((((((((((((((((((((((.(.(((((((.((((((((..((((.........))))..)))((((((.(((((.(.(((((((((((((((((((((.(((((((((((.........))))))))))).))))))))))).)))))))))).).))))).)))))).(((((((....)))))))......)))))..))))))).)))))))))))))))))))))))))).))))))))))))))))).)))).

Structure
-    g                 a                         A C       -u     guauuuaaccacuguuuaguuauuuau      a     u c          -           a           gcc 
 guuu cuagaacacauccacua uuuuUAUGUGGGAGUGUUUUAGCAA G uauaacu  agagu                           uugcua aauac c uucuaaaaaa uaagugggugu uucuagcaaau   u
 |||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||  |||||                           |||||| ||||| | |||||||||| ||||||||||| |||||||||||   a
 uaaa gaucuugugugggugau aaaaauacacccucacaaaaucguu c auauuga  uuuua                           aacgau uugug g aagauuuuuu guUCACCCACA AAGAUCGUUUA   u
u    a                 c                         - a       uu     --auuauuuauguggaauuccacauac      a     u a          u           C           gaa 


Annotation confidence Low
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Genome context
chr6: 5273845-5274131 [+]

Database links

Mature mtr-miR2604-5p

Accession MIMAT0013308
Description Medicago truncatula mtr-miR2604-5p mature miRNA
Sequence 28 - UAUGUGGGAGUGUUUUAGCAAAGC - 51
Evidence experimental
454 [1]

Mature mtr-miR2604-3p

Accession MIMAT0054841
Description Medicago truncatula mtr-miR2604-3p mature miRNA
Sequence 149 - AUUUGCUAGAACACACCCACU - 169
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796