miRBase entry: mtr-MIR2605

Stem-loop mtr-MIR2605


Accession
MI0011856
Description
Medicago truncatula mtr-MIR2605 precursor miRNA


Sequence

46225 reads, 491.0 reads per million, 111 experiments
agauguacacuuaaacuuaguuuauaugaccuacuuaaacuggguuuacaugagcuacuuaaacuaaguUUACAUGAUCUACUUAAACUGAGUuuaaauauguacacuuaaacuuaguuuacaugaccuacuuaaaauaaguuuacauguacauacuuaaacugagauuacauagaaucauugaacaagguugaacuuuuaaauguacacuuaaacucgguuuacaugaccuauuuaaacuuaguuuaaguauguacACUUAAACUCAGUUUACAUGACCUcc
.((.((.((..((((((.((((((..((((.((((((((((((((((((((..........((((..(((((.((((((((..(((.((.(((((((.((((((((..((((((((.((((...........)))).))))))))..)))))))).))))))).)).)))..))).))))))))))..))))..........)))))...........((((.....))))......))))))))))))))).)).))..)))))).))))))..)))).)).

Structure
a  u  a  cu      u      ua  -  c               ------------------------------     gagcuacuua    aa     C     -   CU   A  G       a        cu        g    caug 
 ga gu ca  uaaacu aguuua  ug ac uacuuaaacuggguu                              uacau          aacu  guUUA AUGAU CUA  UAA CU AGUuuaa uauguaca  uaaacuua uuua    a
 || || ||  |||||| ||||||  || || |||||||||||||||                              |||||          ||||  ||||| ||||| |||  ||| || ||||||| ||||||||  |||||||| ||||    c
 cU CA GU  AUUUGA UCAAAU  Ac ug augaauuugauucaa                              augua          uugg  caagu uacua gau  auu ga ucaaauu auacaugu  auuugaau aaau    c
c  C  -  AC      C      UC  a  u               auuuauccaguacauuuggcucaaauucac     aauuuucaag    aa     -     a   ac   a  g       c        ac        a    ucau 


Annotation confidence Low
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Genome context
chr8: 31560873-31561155 [+]

Database links

Mature mtr-miR2605-5p

Accession MIMAT0013309
Description Medicago truncatula mtr-miR2605-5p mature miRNA
Sequence 70 - UUACAUGAUCUACUUAAACUGAGU - 93
Evidence experimental
454 [1]

Mature mtr-miR2605-3p

Accession MIMAT0054842
Description Medicago truncatula mtr-miR2605-3p mature miRNA
Sequence 258 - ACUUAAACUCAGUUUACAUGACCU - 281
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796