miRBase entry: mtr-MIR2606a

Dead hairpin entry

Stem-loop mtr-MIR2606a


Accession
MI0011857
Description
Medicago truncatula mtr-MIR2606a precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

27260 reads, 288.0 reads per million, 111 experiments
cgauuaggagaaaacuuaggUACAAUUCCUUAGGUGCUUUUcguaugguucuuaauuaaaaauacauauuuuuuggauauaacaaacuuugagaaaauuauggaucugagaaaaucaugguaaauuuAGUUAAGAACCAUACGAAAAacaccuaaggaauuguaccuaaguuuucugcauuugauua
......(.((((((((((((((((((((((((((((.(((((((((((((((((((((((....(((.((((((((((........((.(((.....))).))))))))))))...))).....))))))))))))))))))))))).)))))))))))))))))))))))))))).).........

Structure
---cgauua g                            C                       -aaua   --a          auaacaaa  u   g 
         g agaaaacuuaggUACAAUUCCUUAGGUG UUUUcguaugguucuuaauuaaa     cau   uuuuuuggau        cu uga a
         | |||||||||||||||||||||||||||| |||||||||||||||||||||||     |||   ||||||||||        || ||| a
         c ucuuuugaauccauguuaaggaauccac AAAAGCAUACCAAGAAUUGAuuu     gua   aaagagucua        gg auu a
auuaguuua g                            a                       aaaug   cua          --------  u   a