Stem-loop mtr-MIR2606a

Accession

MI0011857

Description

Medicago truncatula mtr-MIR2606a precursor miRNA

Sequence

27260 reads, 288.0 reads per million, 111 experiments

cgauuaggagaaaacuuaggUACAAUUCCUUAGGUGCUUUUcguaugguucuuaauuaaaaauacauauuuuuuggauauaacaaacuuugagaaaauuauggaucugagaaaaucaugguaaauuuAGUUAAGAACCAUACGAAAAacaccuaaggaauuguaccuaaguuuucugcauuugauua
......(.((((((((((((((((((((((((((((.(((((((((((((((((((((((....(((.((((((((((........((.(((.....))).))))))))))))...))).....))))))))))))))))))))))).)))))))))))))))))))))))))))).).........

Structure

---cgauua g                            C                       -aaua   --a          auaacaaa  u   g 
         g agaaaacuuaggUACAAUUCCUUAGGUG UUUUcguaugguucuuaauuaaa     cau   uuuuuuggau        cu uga a
         | |||||||||||||||||||||||||||| |||||||||||||||||||||||     |||   ||||||||||        || ||| a
         c ucuuuugaauccauguuaaggaauccac AAAAGCAUACCAAGAAUUGAuuu     gua   aaagagucua        gg auu a
auuaguuua g                            a                       aaaug   cua          --------  u   a 

Annotation confidence Low

Genome context

chr3: 23050085-23050271 [-]

Mature mtr-miR2606a-5p

• Accession: MIMAT0013310
• Description: Medicago truncatula mtr-miR2606a-5p mature miRNA
• Sequence: 21 - UACAAUUCCUUAGGUGCUUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2606a-3p

• Accession: MIMAT0054843
• Description: Medicago truncatula mtr-miR2606a-3p mature miRNA
• Sequence: 128 - AGUUAAGAACCAUACGAAAA - 147
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796