miRBase entry: mtr-MIR2606b

Stem-loop mtr-MIR2606b


Accession
MI0011858
Description
Medicago truncatula mtr-MIR2606b precursor miRNA


Sequence

aggagaaaacuuaggUACAAUUCCUUAGGUGCUUUUuguaugguucuuuacuaaauuuaccaugauuuccucaaaugcauaauuuucucaaaguuuguuauauccaaauaauauguauuuuuaguuaagaaccauaugaaaagcacauaaggaauuguaccuaaguuuucucca
.((((((((((((((((((((((((((.((((((((((((((((((((.((((((..(((....((((........(((.((((((...))))))))).......)))).....)))..)))))).)))))))))))))))))))).)))))))))))))))))))))))))).

Structure
a                          G                    u      uu   -caug    ccucaaau   u      c 
 ggagaaaacuuaggUACAAUUCCUUA GUGCUUUUuguaugguucuu acuaaa  uac     auuu        gca aauuuu  
 |||||||||||||||||||||||||| |||||||||||||||||||| ||||||  |||     ||||        ||| |||||| u
 ccucuuuugaauccauguuaaggaau cacgaaaaguauaccaagaa ugauuu  aug     uaaa        ugu uugaaa  
a                          a                    u      uu   uauaa    -ccuauau   -      c 


Annotation confidence Not enough data
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Genome context
chr4: 46561956-46562129 [-]

Database links

Mature mtr-miR2606b

Accession MIMAT0013311
Description Medicago truncatula mtr-miR2606b mature miRNA
Sequence 16 - UACAAUUCCUUAGGUGCUUUU - 36
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796