Accession
MI0011862
Description
Medicago truncatula
mtr-MIR2609a precursor miRNA
Sequence
1623
reads,
14.0
reads per million, 111 experiments
ggccuuccauuggcuuUGGAAGUAAUAGGUUCUCACUuguuuggcaaaaguuuagauguauggaaaucuucauuagauaaauaugaaagaguucuucacaaagagauucaugaaauucuuaaaguuagcuaugaugauuuggaugaugaucagaaggguauuuuucuugacaucgcuuguuucuucaauucuuaugaaaugagcuaugccaaagaauugcuauaccUACAUGGUUUUAGUGCUGAAAauggaauuca
....((((((((((.((((((.((.(((((...((.((.(((((((..(((((...(((..((((.(((((((.........))).)))).))))..)))...)))))......((((.....((((....)))).....))))((((.((((((((....))))).)))))))(((((((((............)))))))))..))))))).)).))....)))))..)).)))))).)))...)))))))....
....((((((((((.((((((.((.(((((...((.((.(((((((..(((((...(((..((((.(((((((.........))).)))).))))..)))...)))))......((((.....((((....)))).....))))((((.((((((((....))))).)))))))(((((((((............)))))))))..))))))).)).))....)))))..)).)))))).)))...)))))))....
Structure
ggcc --- u G -A -UCU C g ------------------------------------------------------------------------------------------------aa aga au a - uag
uuccauu ggc uUGGAA UA UAGGU CA Uu uuuggca aguuu ugu ggaa ucuu cau a
||||||| ||| |||||| || ||||| || || ||||||| ||||| ||| |||| |||| ||| u
aagguaA UCG GAUUUU GU AUcca gu aa aaaccgu uuaga aca ucuu agaa gua a
acuu AAG U G AC uauc u g aucgaguaaaguauucuuaacuucuuuguucgcuacaguucuuuuuaugggaagacuaguaguagguuuaguaguaucgauugaaauucuuaaaguac gaa cu g a uaa
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
chr2: 14996815-14997071 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2609a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature mtr-miR2609a-5p
| Accession | MIMAT0013315 |
| Description | Medicago truncatula mtr-miR2609a-5p mature miRNA |
| Sequence | 17 - UGGAAGUAAUAGGUUCUCACU - 37 |
| Evidence |
experimental
454 [1] |
Mature mtr-miR2609a-3p
| Accession | MIMAT0054847 |
| Description | Medicago truncatula mtr-miR2609a-3p mature miRNA |
| Sequence | 227 - UACAUGGUUUUAGUGCUGAAA - 247 |
| Evidence |
experimental
unknown |
References
|
