Stem-loop mtr-MIR2610b

Accession

MI0011866

Description

Medicago truncatula mtr-MIR2610b precursor miRNA

Literature search

1 open access papers mention mtr-MIR2610b
(1 sentences)

Sequence

aAGAUUGAGACUUGUAUGGCUUcguugaaggaugcccggagaguaauucaggaaggcaaaaccgaaggcuggggucagcuaguggaguugccagaaaacaagcguaaggagggaauugguuuccuugacaguaagccugggauguucgacccuaccagagguucuuuccacagugcugguuucauucaugauucaccagagaccaaugcaauuuuagaugaugcaccuggaggagugacaccggucuuugugacgccuggaggagcuugcugcaacuggauugcuguugacauuccuucugugacacccugcucuaaguaauguguuugucuuguuuuuuguuguuuuuuguuuuuaagaaaacuccuuuaguucugcccaaggcgaaagugaaaucauguagggcuuuguu
.................(((....((((((((..((.(((......))).))..(((((..(((..(((((....)))))..)))..)))))((((((((((((...(((((((((((((.((((((.(((((((((((((........)))..((((..((......(((((.((((((.((((((........((((.(.....((((.((......)))))))))))..)))))).))))))..)))))))..)))).)).)))))))))))..)))..)))).....)))))))))..(((((..((((...))))..))))))).))))))))))...(((((((.......)))))))))))))))....)))((((((....(((....))).....))))))..

Structure

----------------aAGAUUGAGACUUGUAU   UUcg        ugcccggagaguaauucaggaaggcaaaaccgaaggcuggggucagcuaguggaguugcc          -  ------------------------uaa         -----    -u   --   a        -  gggauguucgacccua    ag  ucuuuc     -u      u      augauuca    a accaa    a  uu 
                                 GGC    uugaagga                                                            agaaaacaag cg                           ggagggaau     uggu  ucc  uug caguaagc cu                ccag  gu      cacag  gcuggu ucauuc        ccag g     ugca uu  a
                                 |||    ||||||||                                                            |||||||||| ||                           |||||||||     ||||  |||  ||| |||||||| ||                ||||  ||      |||||  |||||| ||||||        |||| |     |||| ||   
                                 ccg    gauuuccu                                                            uuuuuuguuc gu                           ucuuccuua     gucg  agg  aac gucguucg gg                gguc  ca      guguu  uggcca agugag        gguc c     acgu ag  g
uuguuucgggauguacuaaagugaaagcggaac   ucuu        ------------------------------------caaaagaauuuuuguuuuuuguug          u  uuguguaaugaaucucgucccacagug         caguu    uu   uc   -        a  ---------------a    cg  ------     uc      c      ------ga    - -----    -  ua 

Annotation confidence Not enough data

Genome context

chr7: 2035062-2035473 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2610b

Mature mtr-miR2610b

• Accession: MIMAT0013319
• Description: Medicago truncatula mtr-miR2610b mature miRNA
• Sequence: 2 - AGAUUGAGACUUGUAUGGCUU - 22
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796