Stem-loop mtr-MIR2610b

Accession

MI0011866

Description

Medicago truncatula mtr-MIR2610b precursor miRNA

Literature search

1 open access papers mention mtr-MIR2610b
(1 sentences)

Sequence

17337 reads, 148.0 reads per million, 111 experiments

aAGAUUGAGACUUGUAUGGCUUcguugaaggaugcccggagaguaauucaggaaggcaaaaccgaaggcuggggucagcuaguggaguugccagaaaacaagcguaaggagggaauugguuuccuugacaguaagccugggauguucgacccuaccagagguucuuuccacagugcugguuucauucaugauucaccagagaccaaugcaauuuuagaugaugcaccuggaggagugacaccggucuuugugacgccuggaggagcuugcugcaacuggauugcuguugacauuccuucugugacacccugcucuaaguaauguguuugucuuguuuuuuguuguuuuuuguuuuuaagaaaacuccuuuaguucugcccaaggcgaaagugAAAUCAUGUAGGGCUUUGUu
.................(((....((((((((..((.(((......))).))..(((((..(((..(((((....)))))..)))..)))))((((((((((((...(((((((((((((.((((((.(((((((((((((........)))..((((..((......(((((.((((((.((((((........((((.(.....((((.((......)))))))))))..)))))).))))))..)))))))..)))).)).)))))))))))..)))..)))).....)))))))))..(((((..((((...))))..))))))).))))))))))...(((((((.......)))))))))))))))....)))((((((....(((....))).....))))))..

Structure

aAGAUUGAGACUUGUAUGGCUUcguugaaggaugcccggagaguaauucaggaaggcaaaaccgaaggcuggggucagcuaguggaguugccagaaaacaagcguaaggagggaauugguuuccuugacaguaagccugggauguucgacccuaccagagguucuuuccacagugcugguuucauucaugauucaccagagaccaaugcaauuuuagaugaugcaccuggaggagugacaccggucuuugugacgccuggaggagcuugcugcaacuggauugcuguugacauuccuucugugacacccugcucuaaguaauguguuugucuuguuuuuuguuguuuuuuguuuuuaagaaaacuccuuuaguucugcc      -gaaa   A 
                                                                                                                                                                                                                                                                                                                                                                                           caaggc     gug A
                                                                                                                                                                                                                                                                                                                                                                                           ||||||     |||  
                                                                                                                                                                                                                                                                                                                                                                                           GUUUCG     UAC A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------uU      GGAUG   U 

Annotation confidence Low

Genome context

chr7: 2035062-2035473 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2610b

Mature mtr-miR2610b-5p

• Accession: MIMAT0013319
• Description: Medicago truncatula mtr-miR2610b-5p mature miRNA
• Sequence: 2 - AGAUUGAGACUUGUAUGGCUU - 22
• Evidence: experimental ; 454 [1]

Mature mtr-miR2610b-3p

• Accession: MIMAT0054850
• Description: Medicago truncatula mtr-miR2610b-3p mature miRNA
• Sequence: 393 - AAAUCAUGUAGGGCUUUGU - 411
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796