Stem-loop mtr-MIR2611

Accession

MI0011867

Description

Medicago truncatula mtr-MIR2611 precursor miRNA

Sequence

22142 reads, 197.0 reads per million, 111 experiments

ugauuuuguauuugucaguguuugaugaaucugugggaugcgugcuuggucaacaagaugagacUGGAAAGAAAGAACAUGCUAUCuacuaucugagcaagaaguucaccgacugugaaacucgguauacaaugcuugagaagacuuguuguggucuagcuugggcugccaaacgccugcgucauuauuuggugaaucauacaacuugguugauauccagaauggauccgaucaaguauaucuuugagaaagcugcuguuacUGGGAAGAUUGCACGCUGGCAgaugcuuuugucu
.(((...((((((((((((((.((((...((.((((.(.(((.((((..((((..((((((((.(((..(((.((......)).))).)))))).........(((((((((..((((..(..(((.......(((((((.(((((......)))))..)))))))........))).)..))))...)))))))))......(((((((((..(((((...))))).))))))))).)))))))))..)))))))).)))).))....)))).))))))))))))))....))).

Structure

u   -uuu              u    -gaa  u    g u   u    gg    ca     ------------------------------------------------------------------------------------------------------------------------------------------------   c   AA   A  AA 
 gau    guauuugucagugu ugau    uc gugg a gcg gcuu  ucaa  agaug                                                                                                                                                aga UGG  AGA AG  C
 |||    |||||||||||||| ||||    || |||| | ||| ||||  ||||  |||||                                                                                                                                                ||| |||  ||| ||   
 cug    cguagACGGUCGCA GUUA    GG cauu u cgu cgaa  aguu  ucuau                                                                                                                                                ucu auc  uCU UC  A
u   uuuu              C    GAAG  U    g -   -    ag    --     augaacuagccuagguaagaccuauaguugguucaacauacuaagugguuuauuacugcguccgcaaaccgucggguucgaucugguguuguucagaagaguucguaacauauggcucaaagugucagccacuugaagaacgag   -   -a   A  GU 

Annotation confidence Low

Genome context

chr2: 4044572-4044867 [+]

Mature mtr-miR2611-5p

• Accession: MIMAT0013320
• Description: Medicago truncatula mtr-miR2611-5p mature miRNA
• Sequence: 65 - UGGAAAGAAAGAACAUGCUAUC - 86
• Evidence: experimental ; 454 [1]

Mature mtr-miR2611-3p

• Accession: MIMAT0054851
• Description: Medicago truncatula mtr-miR2611-3p mature miRNA
• Sequence: 263 - UGGGAAGAUUGCACGCUGGCA - 283
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796