Stem-loop mtr-MIR2611

Accession

MI0011867

Description

Medicago truncatula mtr-MIR2611 precursor miRNA

Sequence

ugauuuugUAUUUGUCAGUGUUUGAUGAAucugugggaugcgugcuuggucaacaagaugagacuggaaagaaagaacaugcuaucuacuaucugagcaagaaguucaccgacugugaaacucgguauacaaugcuugagaagacuuguuguggucuagcuugggcugccaaacgccugcgucauuauuuggugaaucauacaacuugguugauauccagaauggauccgaucaaguauaucuuugagaaagcugcuguuacugggaagauugcacgcuggcagaugcuuuugucu
.(((...((((((((((((((.((((...((.((((.(.(((.((((..((((..((((((((.(((..(((.((......)).))).)))))).........(((((((((..((((..(..(((.......(((((((.(((((......)))))..)))))))........))).)..))))...)))))))))......(((((((((..(((((...))))).))))))))).)))))))))..)))))))).)))).))....)))).))))))))))))))....))).

Structure

u   -uuu              U    -GAA  u    g u   u    gg    ca     agacuggaaagaaagaacaugcuaucuacuaucugagcaagaa         -cu    aa uc   -auacaau       -a     ug 
 gau    gUAUUUGUCAGUGU UGAU    uc gugg a gcg gcuu  ucaa  agaug                                           guucaccga   guga  c  ggu        gcuugag  agacu  u
 |||    |||||||||||||| ||||    || |||| | ||| ||||  ||||  |||||                                           |||||||||   ||||  |  |||        |||||||  |||||   
 cug    cguagacggucgca guua    gg cauu u cgu cgaa  aguu  ucuau                                           uaagugguu   uacu  g  ccg        cggguuc  ucugg  u
u   uuuu              c    gaag  u    g -   -    ag    --     --augaacuagccuagguaagaccuauaguugguucaacauac         uau    gc -u   caaaccgu       ga     ug 

Annotation confidence Not enough data

Genome context

chr2: 4044572-4044867 [+]

Mature mtr-miR2611

• Accession: MIMAT0013320
• Description: Medicago truncatula mtr-miR2611 mature miRNA
• Sequence: 9 - UAUUUGUCAGUGUUUGAUGAA - 29
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796