Stem-loop mtr-MIR2585c

Accession

MI0011869

Description

Medicago truncatula mtr-MIR2585c precursor miRNA

Sequence

52315 reads, 522.0 reads per million, 111 experiments

UAGGGGUCGUUUAAAAAUUGGUCccuguauucgcuaauccuugcaaacuagccuugcaaucauuaaucauuuaaaauuuaguccuuugaccaacuuaaucacugccacgucacuaauuugaugauguggcaaucacugccaaacaugaaauuccaauuuugcccuuaagaagaggacaaaauauugaaaaaggauuggaaauccugggguaaaauuggaauuucauguggcguggcaaugauuaaguggggagauggacgaaauuuuaaaugauuaaacaaugcagggguaaauugcCAGGAUUAGCGAUUACAGGGACcaauuuuuaaacgaccccu
.((((((((((((((((((((((((((((.(((((((((((.((((..((.(((((((....(((((((((((((((((.((((.((..((.(((((((((.(((((((((...............(((((.....))))).(((((((((((((((((((((((.........................((((((...)))))))))))))))))))))))))))))))))))))).))))))))).))..)).)))).)))))))))))))))))....))))))).))..)))).))))))))))).))))))))))))))))))))))))))))

Structure

U                            u           u    ac  g       auca                 a    u  ga  a         c         acuaauuugaugauguggcaaucacugccaa                       uaagaagaggacaaaauauugaaaa      g 
 AGGGGUCGUUUAAAAAUUGGUCccugua ucgcuaauccu gcaa  ua ccuugca    uuaaucauuuaaaauuu gucc uu  cc acuuaauca ugccacguc                               acaugaaauuccaauuuugcccu                         aggauu  
 |||||||||||||||||||||||||||| ||||||||||| ||||  || |||||||    ||||||||||||||||| |||| ||  || ||||||||| |||||||||                               |||||||||||||||||||||||                         |||||| g
 uccccagcaaauuuuuaacCAGGGACAU AGCGAUUAGGA cguu  au gggacgu    aauuaguaaauuuuaaa cagg ag  gg ugaauuagu acggugcgg                               uguacuuuaagguuaaaaugggg                         uccuaa  
-                            U           C    aa  g       aaca                 g    u  ag  g         a         -------------------------------                       -------------------------      a 

Annotation confidence Low

Genome context

chr5: 11514537-11514874 [-]

Mature mtr-miR2585c-5p

• Accession: MIMAT0054853
• Description: Medicago truncatula mtr-miR2585c-5p mature miRNA
• Sequence: 1 - UAGGGGUCGUUUAAAAAUUGGUC - 23
• Evidence: experimental ; unknown

Mature mtr-miR2585c-3p

• Accession: MIMAT0013322
• Description: Medicago truncatula mtr-miR2585c-3p mature miRNA
• Sequence: 298 - CAGGAUUAGCGAUUACAGGGAC - 319
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796