Stem-loop mtr-MIR2585d

Accession

MI0011870

Description

Medicago truncatula mtr-MIR2585d precursor miRNA

Sequence

67681 reads, 536.0 reads per million, 111 experiments

uaggcgucauuuaaaaauuagucccuguaaucguuaauccugguaauuuguccuugcauuauuuaaucAUUUAAAAUUUCGUCCUUUGACaaacuuaaucacucccaagucaucaaauuagcaaaauggcauggaaauggacaaaaauacccucgucuuuauuaugagaagaagaugaagacagggauaaaaaugucauuucacgaauggaugacgaggguauuuuuguccauucccaugucauuuugcuaauuugaugacgugacagugauuaaguuggucaaaggacgaaauuuuaaaugauuaaacaaugcaaggguaaauuguCAGGAUUAGCGAUUACAGGGACuaauuuuuaaaugacgccu
.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((.((((((((((((..((.((((((((((((((((((((((((((.((((((((((((((((((((((((((((.(((((..........((((..........)))).)))))..)))))).)))))))))))))))))))))).)))))))))))))))))))))))))).))..)))))))))))).))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

u                                                           a                             a            cc  a                          a                      -      -a     agaagaugaa    ggga 
 aggcgucauuuaaaaauuagucccuguaaucguuaauccugguaauuuguccuugcauu uuuaaucAUUUAAAAUUUCGUCCUUUGAC aacuuaaucacu  ca gucaucaaauuagcaaaauggcaugg aauggacaaaaauacccucguc uuuauu  ugaga          gaca    u
 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||          ||||     
 uccgcaguaaauuuuuaauCAGGGACAUUAGCGAUUAGGACuguuaaaugggaacguaa aaauuaguaaauuuuaaagcaggaaacug uugaauuaguga  gu caguaguuuaaucguuuuacuguacc uuaccuguuuuuaugggagcag agguaa  acuuu          cugu    a
-                                                           c                             g            ca  g                          c                      u      gc     ---------a    aaaa 

Annotation confidence Low

Genome context

chr6: 19511859-19512226 [+]

Mature mtr-miR2585d-5p

• Accession: MIMAT0054854
• Description: Medicago truncatula mtr-miR2585d-5p mature miRNA
• Sequence: 69 - AUUUAAAAUUUCGUCCUUUGAC - 90
• Evidence: experimental ; unknown

Mature mtr-miR2585d-3p

• Accession: MIMAT0013323
• Description: Medicago truncatula mtr-miR2585d-3p mature miRNA
• Sequence: 328 - CAGGAUUAGCGAUUACAGGGAC - 349
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796