miRBase entry: mtr-MIR2612

Stem-loop mtr-MIR2612


Accession
MI0011872
Description
Medicago truncatula mtr-MIR2612 precursor miRNA


Sequence

8912 reads, 172.0 reads per million, 111 experiments
auaagcucuaucauguauuUGAUAGUGUCAACUAGUACAGaaaaccuaucuaucuagcuacacaaucaaaauauguuagauagauaaguuuuaugUAGUAGUUGACAUUAUCAAAUacaugaaagaacuuga
.((((.(((.((((((((((((((((((((((((.((((.(((((.((((((((((((................)))))))))))).))))).)))).)))))))))))))))))))))))).))).)))).

Structure
a    c   a                        G    G     c            uacacaa 
 uaag ucu ucauguauuUGAUAGUGUCAACUA UACA aaaac uaucuaucuagc       u
 |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||||||        
 guuc aga aguacaUAAACUAUUACAGUUGAU AUgu uuuug auagauagauug       c
a    a   a                        G    a     a            uauaaaa 


Annotation confidence High
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Genome context
chr4: 24076464-24076595 [+]

Database links

Mature mtr-miR2612-5p

Accession MIMAT0013325
Description Medicago truncatula mtr-miR2612-5p mature miRNA
Sequence 20 - UGAUAGUGUCAACUAGUACAG - 40
Evidence experimental
454 [1]

Mature mtr-miR2612-3p

Accession MIMAT0054855
Description Medicago truncatula mtr-miR2612-3p mature miRNA
Sequence 96 - UAGUAGUUGACAUUAUCAAAU - 116
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796